Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J24
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    27   9.0  

>Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical
           protein K09E4.2 protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 523 ILYKLTNTAQRSINTYLPKTFCSILIHNIYMAPWTHLNTI*RIQL 389
           + Y L  + + ++  + P  F ++L++N YMA   +L     IQL
Sbjct: 178 VFYSLAVSIKMNVLLFAPALFFTLLLNNSYMATLGYLTVCGLIQL 222


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
           protein 4 protein.
          Length = 2325

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 90  KETISNEFALRPLGTALRNSNTTGILFFPKLLRILDNKYCE*YDFNC 230
           KE +S E+ +R  G +    NT  I++FP    I+++       F+C
Sbjct: 201 KEIVSKEYNVRDNGLSPSLQNTLSIVYFPTDRTIIESTLPHDEIFDC 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,201,844
Number of Sequences: 27780
Number of extensions: 217137
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)