Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J23
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    28   0.97 
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   3.9  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   3.9  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   6.8  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    25   9.0  

>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 509 DAGYQPSCVCVTPGLGIPVLSIRTHNTIA 423
           D GYQ S + + P L   VL+ R HN ++
Sbjct: 505 DLGYQMSLIPLLPSLARAVLAAREHNCLS 533


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 351 YGNLVTTFTSSK*SSLVNFPATPTAVKPPRVGPKTSLNHSIGS 223
           YG     +T+S  SS+V  P  P    P  +    + N+S+ S
Sbjct: 321 YGIDSNLYTNSNSSSIVQNPLQPARTGPAAINYNYTTNYSVSS 363


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 376 LMILPQVPLRKPCYDFYFL*MIKFGQLP 293
           L++  ++ L K  + +YF   +KFGQLP
Sbjct: 337 LVLAGELELAKKMHLYYFSIYLKFGQLP 364


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 162 LLGIPRLWGIIANPNPQHEGVSTGCPGL*ARENM 61
           L G+P ++G++  P    EG++    G    EN+
Sbjct: 292 LYGVPSMYGVVTLPYSVREGINIFLDGHIPTENL 325


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 88  PGPLGQGEHADSFSVARVRPRTSKGI 11
           PG LG    + +  +  V+PRT +G+
Sbjct: 161 PGTLGSRSRSTTSFIRNVKPRTGEGL 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,249
Number of Sequences: 5004
Number of extensions: 48198
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)