Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J23
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310... 31 0.42
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694... 31 0.42
07_01_0693 - 5242932-5243213,5245544-5245695,5246267-5246291 31 0.74
05_04_0110 + 18058821-18058900,18059119-18059182,18059351-180594... 30 1.3
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 29 2.3
10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106... 29 3.0
09_04_0617 - 18981258-18981949,18983869-18984427 29 3.0
12_02_0680 + 21903520-21904093,21904474-21905162 28 4.0
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 28 5.2
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 28 5.2
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 28 5.2
09_02_0330 + 7321031-7321231,7321313-7321434,7321461-7322135,732... 27 6.9
04_04_0312 + 24314940-24315143,24316074-24316253,24316801-243170... 27 6.9
11_06_0254 - 21721667-21721718,21722025-21722647 27 9.1
09_02_0247 + 6222463-6222628,6223121-6223134 27 9.1
05_02_0122 - 6840840-6841307 27 9.1
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610... 27 9.1
>03_06_0135 +
31928838-31929698,31929783-31929932,31930795-31931065,
31931157-31931249,31931442-31931616,31931715-31931960,
31932100-31932294,31932604-31932802
Length = 729
Score = 31.5 bits (68), Expect = 0.42
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 393 HRYVRCARAPCNCIVRADRENRDPEPW 473
HR C R P C+V +E + P PW
Sbjct: 255 HRERSCPRLPATCLVSMPKEYKPPAPW 281
>02_04_0544 -
23768808-23768910,23769005-23769030,23769379-23769497,
23769542-23769668,23769842-23769905,23769981-23770095,
23770867-23771101,23771196-23771382,23771948-23772305,
23772432-23772465
Length = 455
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 294 PATPTAVKPPRVGPKTSLNHSIGSSDG-RCVQRAGT*STRAYDSRLLGIPR 145
P PT PP PKT+ + + SSDG R + + S YD R L + R
Sbjct: 24 PPYPTGSAPPVRLPKTACSATYFSSDGSRLLATVASASATVYDCRTLSVVR 74
>07_01_0693 - 5242932-5243213,5245544-5245695,5246267-5246291
Length = 152
Score = 30.7 bits (66), Expect = 0.74
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 405 RCARAPCNCIVRADRENRDPEPWC 476
RC+ PCNC+ R + PWC
Sbjct: 65 RCSAQPCNCVGRCCNGSTLEHPWC 88
>05_04_0110 +
18058821-18058900,18059119-18059182,18059351-18059437,
18059521-18059598,18060105-18060201,18060817-18060860,
18061071-18061257,18061324-18061406
Length = 239
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 316 FRGSKSRNKVSVGEPAEGSLTCVDRYIDM*GARAHHAIVL 435
++ K+ V +GE A VDRY + G+++HH I L
Sbjct: 3 YQHGKTHQNVVMGERARVVRCAVDRYFLLDGSKSHHIICL 42
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 84 PGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSD 257
PG L + R G+ GL + I +E +S +HK + SL H Y + +L +D
Sbjct: 284 PGQRLIIARGGEGGLGNACILKEMWLSKAHKEEEMASLSTGHPGTETYLILELKSIAD 341
>10_01_0085 +
1061962-1062141,1062283-1062431,1062734-1062819,
1062986-1063113,1063213-1063341,1063428-1063495,
1063575-1063812
Length = 325
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +3
Query: 75 PRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSS 254
P G PL+LL GDWG + N+ + K+A T + FV + + N L
Sbjct: 31 PVAAGAPLRLLVVGDWG-RKGGYNQTRVAEQMGKVAEETEIDFVVSTGDNFLENGLAGVD 89
Query: 255 D 257
D
Sbjct: 90 D 90
>09_04_0617 - 18981258-18981949,18983869-18984427
Length = 416
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 517 GRVTRVTSQVVCVSHQGSGSLFSLSARTIQLHGARAHLT 401
G V R ++VV ++ QG GS+ ++ + HGA+ +T
Sbjct: 171 GAVVRDRTEVVGIAKQGDGSIVVKTSSGEEFHGAKCIIT 209
>12_02_0680 + 21903520-21904093,21904474-21905162
Length = 420
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 517 GRVTRVTSQVVCVSHQGSGSLFSLSARTIQLHGARAHLT 401
G V R ++V+ ++ QG GS+ ++ + HGA+ +T
Sbjct: 176 GAVLRDRTEVIDIAKQGDGSILVKTSSGEEFHGAKCIIT 214
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 83 PGQPVETPSCWGLGFAIIPHKRGIPSKRES*ARVDYVPALCTHRPSLLP--IE*FSEV 250
PG+P +TP W + + +P + +P+KR VD T R ++ I+ F EV
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKRGFTQFVDVGNVTATGRRNITGYCIDVFDEV 500
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 124 PQSPARRSFNGLPGPLGQGEHADSFSVARVRPRTS 20
PQ P F GLP +G +H D ++A P S
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHPLLS 311
>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 150 PRLWGIIANPNPQHEGVSTGCPGL*ARENML 58
P LW +++ P P+++ + G PG R +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140
>09_02_0330 +
7321031-7321231,7321313-7321434,7321461-7322135,
7322218-7322287,7322469-7322768
Length = 455
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -1
Query: 417 RARTSHIYVSIDTR**SFRRFPYGNLVTTFTS--SK*SSLVNFPATPTAVKPPRVGPKTS 244
RA I +D R +F ++P ++V T S+ + L P + +++ PR GP S
Sbjct: 119 RAPNDEIMTLVDARK-TFIQWPKEDIVVKMTPRPSRPTELTP-PKSKLSIEAPR-GPALS 175
Query: 243 LNHSIGSSD 217
+ HS+G +D
Sbjct: 176 VPHSLGGAD 184
>04_04_0312 +
24314940-24315143,24316074-24316253,24316801-24317030,
24317205-24317375,24317685-24317790,24318099-24318305,
24318646-24318806,24319001-24319103
Length = 453
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 312 SSLVNFPATPTAVKPPRVGPKTSLNHSIGSSD 217
SS ++ P P A+ PP +T SIGS+D
Sbjct: 49 SSRIDLPGRPAALVPPSGKKQTKEKISIGSTD 80
>11_06_0254 - 21721667-21721718,21722025-21722647
Length = 224
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -1
Query: 297 FPATPTAVKPPRVGPKTSLNHSIGSSDGRCVQRAGT*STRAYDS 166
F + PT+ +P R+ ++ +H + S+DG+ + RAG +D+
Sbjct: 144 FASVPTSTQPNRMFVHSATSHGLVSNDGKQL-RAGLPQRTIFDA 186
>09_02_0247 + 6222463-6222628,6223121-6223134
Length = 59
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 250 LRTDTRWLHGRRRCWE 297
L+ RWL+ RRCW+
Sbjct: 34 LKESPRWLYSSRRCWD 49
>05_02_0122 - 6840840-6841307
Length = 155
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 231 IGSSDGRCVQRAGT*STRAYDSRLLGIPRLWG 136
+G+ G C + ++R Y S L+G+PR G
Sbjct: 109 VGAGGGGCTSSRASITSRVYFSGLIGLPRSIG 140
>02_05_0490 +
29456825-29457499,29458771-29459057,29460922-29461039,
29461451-29461972,29462058-29462170,29463033-29463053,
29463726-29463960,29464218-29464381,29464695-29464776,
29465077-29465166,29465625-29465858,29466347-29466418,
29466857-29467000,29467573-29467659,29467940-29468098,
29469216-29469476,29469789-29469836
Length = 1103
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 348 RRGTCGRIINVCR*IHRYVRCARAPC 425
RRG+ +I+VC+ I CA+ PC
Sbjct: 380 RRGSATELISVCKEIEFPEMCAKFPC 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,506,150
Number of Sequences: 37544
Number of extensions: 373671
Number of successful extensions: 934
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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