Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J23
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical pr...    33   0.094
Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.     29   2.7  
AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical...    29   2.7  
AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical...    29   2.7  
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno...    29   2.7  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    27   6.2  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC024746-14|AAF60406.1|  227|Caenorhabditis elegans Hypothetical...    27   6.2  
AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical
           protein ZK757.1 protein.
          Length = 324

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 439 RTIQLHGARAHLTYLCIYRHTLMILPQVPLRKPCYDFYF 323
           R + +H  R  LTY  + +  + IL  +PL    +DFYF
Sbjct: 206 RNVDVHRRRVQLTYSMLLQSMIPILVSIPLLVGSFDFYF 244


>Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 339 VTTFTSSK*SSLVNFPATPTAVKPPRVGPKTSLNHSIGS 223
           VT  TS K     +  ATP + KPPR  P+T L+    S
Sbjct: 115 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 153


>Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 339 VTTFTSSK*SSLVNFPATPTAVKPPRVGPKTSLNHSIGS 223
           VT  TS K     +  ATP + KPPR  P+T L+    S
Sbjct: 113 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 151


>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
          Length = 1040

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +2

Query: 257  PTRGGFTAVGVAGKLTKLDHLEEVKVVTR-FP*GNLR---KDH*RVSIDT*ICEVRARTM 424
            P R G+TAV +A  L++LD   E  VV R F  GN+      H + ++   +   +  T 
Sbjct: 894  PNRAGYTAVMLAA-LSQLDDDMEKAVVHRLFQMGNVNAKASQHGQTALMLAVSHGKKTTT 952

Query: 425  QLYCACG 445
            +L  ACG
Sbjct: 953  ELLLACG 959


>AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 339 VTTFTSSK*SSLVNFPATPTAVKPPRVGPKTSLNHSIGS 223
           VT  TS K     +  ATP + KPPR  P+T L+    S
Sbjct: 115 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 153


>AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 339 VTTFTSSK*SSLVNFPATPTAVKPPRVGPKTSLNHSIGS 223
           VT  TS K     +  ATP + KPPR  P+T L+    S
Sbjct: 113 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 151


>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abnormal
            morphology protein19 protein.
          Length = 1040

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +2

Query: 257  PTRGGFTAVGVAGKLTKLDHLEEVKVVTR-FP*GNLR---KDH*RVSIDT*ICEVRARTM 424
            P R G+TAV +A  L++LD   E  VV R F  GN+      H + ++   +   +  T 
Sbjct: 894  PNRAGYTAVMLAA-LSQLDDDMEKAVVHRLFQMGNVNAKASQHGQTALMLAVSHGKKTTT 952

Query: 425  QLYCACG 445
            +L  ACG
Sbjct: 953  ELLLACG 959


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
 Frame = -3

Query: 136 DNCKPQSPARRSFNGLPGPLGQ----GE--HADSFSVA 41
           ++C+  +PAR+   G PGP GQ    GE  H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 162 LLGIPRLWGIIANPNPQHEGVSTGCPGL*ARENM 61
           L G+P ++G++  P+   EG++    G    ENM
Sbjct: 300 LYGVPGVYGVVTLPSGVREGINMFLEGFIRTENM 333


>AC024746-14|AAF60406.1|  227|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12b protein.
          Length = 227

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 452 LSIRTHNTIAWCARAPHIS 396
           LSI+  NT+AWC+  P  S
Sbjct: 143 LSIQMFNTVAWCSSFPQFS 161


>AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12a protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 452 LSIRTHNTIAWCARAPHIS 396
           LSI+  NT+AWC+  P  S
Sbjct: 396 LSIQMFNTVAWCSSFPQFS 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,077,558
Number of Sequences: 27780
Number of extensions: 287815
Number of successful extensions: 738
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)