Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J22
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   185   3e-48
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    29   0.30 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.52 
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   1.6  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   2.1  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.8  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   6.4  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   6.4  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   6.4  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    24   8.5  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    24   8.5  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  185 bits (450), Expect = 3e-48
 Identities = 87/110 (79%), Positives = 101/110 (91%)
 Frame = +2

Query: 32  EKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRK 211
           +K Q   S +HRIRITLTSRNVR+LEKVCSDL+N AK ++LRVKGPVR+PTK+L+ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 212 TPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 361
           TP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIA
Sbjct: 68  TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.30
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 149 KLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 301
           K+ +KGP  +P KV   T  ++P    S + + F+   H R+I L+S + +
Sbjct: 92  KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 28.3 bits (60), Expect = 0.52
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 14   VSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVK 163
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 149 KLRVKGPVRMPTKV---LRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITS 319
           K R  G +  P  V   LR    KT  G G    +    ++  R+ DLH   E   +I +
Sbjct: 785 KSRENGTIPRPLYVISHLRPLLHKTSLGVGDILLE-VNGKMITRLSDLHE-FETESEIKA 842

Query: 320 INIEPGVEVEVTI 358
           + +  G+E+E+TI
Sbjct: 843 VILRDGIEMEITI 855


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 11  VVSGKDIEKPQAEISPIHRIRITLTSRNVRS 103
           V +  D+EKPQ +++   R+   L S N R+
Sbjct: 493 VTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 254 MRIHKRVIDLHSPSEIVKQITSINIEPGV 340
           +R+H+R I L + S+ ++   + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 214 CFTCCDAENLGRHSDWTLYTEF 149
           C+ C  A+NL  HS  +L+  F
Sbjct: 469 CYLCLYAQNLNSHSSQSLFELF 490


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 265 VDAHLESVPSLGTLTARCFTCCDAENLG 182
           + A L+++ SLG       TC  AEN G
Sbjct: 52  IQADLKTMTSLGVYGMSAITCLVAENAG 79


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 206 RKTPCGEGSKTWDRFQM 256
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 275 IDLHSPSEIVKQITSINIEPGVEVEVT 355
           ID  SPS I  ++ S N+E G    VT
Sbjct: 545 IDGESPSSISSRLPSSNLEQGSSSSVT 571


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 228 PSPQGVLRVVMRRTLVGIRTGPFTR 154
           P PQ ++ +     L G+   PF R
Sbjct: 176 PQPQAIMHLETSSNLTGVTVNPFNR 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,418
Number of Sequences: 5004
Number of extensions: 35850
Number of successful extensions: 95
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)