Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J22
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514          169   6e-43
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923          169   6e-43
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294          169   8e-43
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504...    54   6e-08
06_01_0379 - 2723365-2723490,2724558-2724647,2724813-2725046,272...    30   0.88 
01_05_0790 + 25253363-25254136,25259037-25259897                       28   2.7  
02_05_0551 + 29907768-29907909,29907995-29909280                       27   8.2  

>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
          Length = 130

 Score =  169 bits (412), Expect = 6e-43
 Identities = 79/117 (67%), Positives = 98/117 (83%)
 Frame = +2

Query: 14  VSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVL 193
           + G  +   +A    ++RIRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVR+PTKVL
Sbjct: 13  MKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIPTKVL 72

Query: 194 RITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 364
            ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S  ++VKQITSI IEPGVEVEVTIAD
Sbjct: 73  HITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 129


>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
          Length = 128

 Score =  169 bits (412), Expect = 6e-43
 Identities = 76/101 (75%), Positives = 92/101 (91%)
 Frame = +2

Query: 62  HRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTW 241
           HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMPTKVL ITTRK+PCGEG+ TW
Sbjct: 27  HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTW 86

Query: 242 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 364
           DRF+MR+HKRVIDL S +++VKQITSI IEPGVEVEVTI+D
Sbjct: 87  DRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127


>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
          Length = 127

 Score =  169 bits (411), Expect = 8e-43
 Identities = 79/117 (67%), Positives = 98/117 (83%)
 Frame = +2

Query: 14  VSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVL 193
           + G  +   +A    ++RIRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVR+PTKVL
Sbjct: 10  MKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIPTKVL 69

Query: 194 RITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 364
            ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S  ++VKQITSI IEPGVEVEVTIAD
Sbjct: 70  HITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 126


>03_02_0020 -
           5045900-5046211,5046233-5046290,5046604-5047242,
           5048475-5048515,5048672-5048728,5048952-5049140
          Length = 431

 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
 Frame = +2

Query: 50  ISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEG 229
           ++P  +IRI L S  V  +E  C  +I  AK    +  GPV +PTK        +P    
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388

Query: 230 SKTWDRFQMRIHKRVIDLHSP-SEIVKQITSINIEPGVEVEVTI 358
              +  F++R H+R+ID+  P ++ +  +  + +  GV+VEV +
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431


>06_01_0379 -
           2723365-2723490,2724558-2724647,2724813-2725046,
           2725174-2725470
          Length = 248

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 248 ICPKSWNPHRKVFYV-L*CGEPWSAFGLDPLHG 153
           +CP  W+ HR+ F++ + C  P++  G   L+G
Sbjct: 183 VCPAYWSAHRRWFFMSMICLNPFTCIGRSKLNG 215


>01_05_0790 + 25253363-25254136,25259037-25259897
          Length = 544

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 177 CRPRFSASQHVKHLAVRVPRLGTDSRCASTSV 272
           C P  SA+  +KH A++   LGTD+  A  +V
Sbjct: 211 CGPGGSAAPALKHKALQAEALGTDNAMADVAV 242


>02_05_0551 + 29907768-29907909,29907995-29909280
          Length = 475

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 101 SLEKVCSDLINGAKKQKLRVKG--PVRMPTKVLRITTRKTPCGEGSK 235
           ++   C+D + G     LRV    P    + VLR+T R  PC    K
Sbjct: 35  AVSSTCADELPGRDWDSLRVSAASPRNGTSAVLRLTHRHGPCAPAGK 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,380,745
Number of Sequences: 37544
Number of extensions: 263255
Number of successful extensions: 703
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)