Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J22
(422 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical... 175 8e-45
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ... 29 1.4
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr... 28 3.2
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 28 3.2
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 28 3.2
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ... 27 5.5
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ... 27 5.5
Z46934-9|CAD18881.1| 204|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z36719-3|CAA85314.1| 135|Caenorhabditis elegans Hypothetical pr... 27 7.3
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 27 7.3
AC006656-1|AAF39881.1| 592|Caenorhabditis elegans Hypothetical ... 27 7.3
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 26 9.7
U41021-7|AAL02487.1| 680|Caenorhabditis elegans Hypothetical pr... 26 9.7
U41021-6|AAL02488.1| 713|Caenorhabditis elegans Hypothetical pr... 26 9.7
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 26 9.7
>AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical
protein Y105E8A.16 protein.
Length = 117
Score = 175 bits (427), Expect = 8e-45
Identities = 78/101 (77%), Positives = 95/101 (94%)
Frame = +2
Query: 62 HRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTW 241
HRIR+TLTS+NV+ LEKVC+ LI+GAK + L VKGP+RMPTKVLRITTRKTPCGEGSKTW
Sbjct: 17 HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76
Query: 242 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 364
DRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT AD
Sbjct: 77 DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117
>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
protein F28B3.1 protein.
Length = 1539
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 35 KPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKK 145
+ +A+ SP HRI +TS+N CS L+ A++
Sbjct: 943 RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 104 LEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGE 226
+E V + + G KK+ + K + PTK +T++ P E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399
>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
F55G11.9 protein.
Length = 1431
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 384 FGSCAYASAMVTSTSTPGSILIEVICFT 301
F S Y +A + +T T GS+L+ V C T
Sbjct: 962 FVSLVYLTASLINTPTKGSLLLYVFCLT 989
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 233 WNPHRKVFYVL*CGEPWSAFGLDPLHGVFV 144
W + + FY G+PWS+ G P+ G V
Sbjct: 1447 WPGYEEHFYAKNTGKPWSSGGFKPIAGAKV 1476
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 233 WNPHRKVFYVL*CGEPWSAFGLDPLHGVFV 144
W + + FY G+PWS+ G P+ G V
Sbjct: 72 WPGYEEHFYAKNTGKPWSSGGFKPIAGAKV 101
>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
protein C44E4.1a protein.
Length = 2712
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 41 QAEISPIHRIRITLTSRNVRSLEKVCSDLINGAK 142
Q+EIS I +IR TL + + K+ SDL G K
Sbjct: 1140 QSEISTIEKIRNTLNGDGYQGMYKLMSDLGLGWK 1173
>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
protein C44E4.1c protein.
Length = 2710
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 41 QAEISPIHRIRITLTSRNVRSLEKVCSDLINGAK 142
Q+EIS I +IR TL + + K+ SDL G K
Sbjct: 1140 QSEISTIEKIRNTLNGDGYQGMYKLMSDLGLGWK 1173
>Z46934-9|CAD18881.1| 204|Caenorhabditis elegans Hypothetical
protein ZK1320.11 protein.
Length = 204
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 330 SILIEVICFTISEGECRSITRLWMR 256
S L+EVICF +S + + +WM+
Sbjct: 98 SSLMEVICFGLSSKQAVQVIDIWMK 122
>Z36719-3|CAA85314.1| 135|Caenorhabditis elegans Hypothetical
protein C06C3.7 protein.
Length = 135
Score = 26.6 bits (56), Expect = 7.3
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 128 INGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWD-RFQMRIHKRVIDLHSPSEIV 304
I+G K+ R+K M K ++I +TP E K R + RI KR ++H +
Sbjct: 50 IDGQKENPKRIKMSQHMTAKEVKIPLLRTPDEEARKIEKLRREARI-KRSKEVHYDAAEQ 108
Query: 305 KQITSINIEPGVEVE 349
+QI +N E V++E
Sbjct: 109 QQI-MMNYEWTVQME 122
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 208 TCCDAENLGRHSDWTLYT 155
TCCD E G +DW +T
Sbjct: 1195 TCCDPEKTGLWNDWGAWT 1212
>AC006656-1|AAF39881.1| 592|Caenorhabditis elegans Hypothetical
protein H12I13.1 protein.
Length = 592
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 89 RNVRSLEKVC-SDLINGAKKQKLRVKGPVRMPTKVLRITTRKT 214
R+ +S KVC + L GAKK++ + K+L IT KT
Sbjct: 364 RDNKSSNKVCRTSLSGGAKKKRKERNARSEVGDKILGITETKT 406
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +2
Query: 146 QKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSI 322
QK VK ++ + L++TT+K +G+K + K+ +D + +K++ ++
Sbjct: 855 QKQIVKRSLKRAIRKLKLTTKKDSQSKGTKQQKLVLLSYKKKKVDEKKFQQYLKEVENV 913
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +2
Query: 146 QKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSI 322
QK VK ++ + L++TT+K +G+K + K+ +D + +K++ ++
Sbjct: 855 QKQIVKRSLKRAIRKLKLTTKKDSQSKGTKQQKLVLLSYKKKKVDEKKFQQYLKEVENV 913
>U41021-7|AAL02487.1| 680|Caenorhabditis elegans Hypothetical
protein F14D12.1a protein.
Length = 680
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 86 SRNVRSLEKVCSDLINGAKK-QKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRI 262
S+ +L++ S I+ Q R VR+PT++L + + G K+ F+ ++
Sbjct: 590 SQRTLTLQQQSSSSIDSLNSTQTTRTTSSVRLPTRILVNQSSTSSEGSSGKSQHYFESKV 649
Query: 263 HKRVIDLHSPSE 298
+ PS+
Sbjct: 650 GPKTSSTSHPSD 661
>U41021-6|AAL02488.1| 713|Caenorhabditis elegans Hypothetical
protein F14D12.1b protein.
Length = 713
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 86 SRNVRSLEKVCSDLINGAKK-QKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRI 262
S+ +L++ S I+ Q R VR+PT++L + + G K+ F+ ++
Sbjct: 590 SQRTLTLQQQSSSSIDSLNSTQTTRTTSSVRLPTRILVNQSSTSSEGSSGKSQHYFESKV 649
Query: 263 HKRVIDLHSPSE 298
+ PS+
Sbjct: 650 GPKTSSTSHPSD 661
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +2
Query: 146 QKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSI 322
QK VK ++ + L++TT+K +G+K + K+ +D + +K++ ++
Sbjct: 855 QKQIVKRSLKRAIRKLKLTTKKDSQSKGTKQQKLVLLSYKKKKVDEKKFQQYLKEVENV 913
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,244,795
Number of Sequences: 27780
Number of extensions: 212751
Number of successful extensions: 573
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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