Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J21
(504 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14972-1|AAA85660.1| 165|Homo sapiens ribosomal protein S10 pro... 217 1e-56
BX255972-2|CAH73100.1| 165|Homo sapiens ribosomal protein S10 p... 217 1e-56
BC073799-1|AAH73799.1| 165|Homo sapiens RPS10 protein protein. 217 1e-56
BC071946-1|AAH71946.1| 165|Homo sapiens ribosomal protein S10 p... 217 1e-56
BC070235-1|AAH70235.1| 165|Homo sapiens RPS10 protein protein. 217 1e-56
BC005012-1|AAH05012.1| 165|Homo sapiens RPS10 protein protein. 217 1e-56
BC001955-1|AAH01955.1| 165|Homo sapiens RPS10 protein protein. 217 1e-56
BC001032-1|AAH01032.1| 165|Homo sapiens ribosomal protein S10 p... 217 1e-56
AB209165-1|BAD92402.1| 174|Homo sapiens ribosomal protein S10 v... 215 6e-56
BX255972-3|CAH73101.1| 172|Homo sapiens ribosomal protein S10 p... 200 2e-51
AB007151-1|BAA25817.1| 78|Homo sapiens ribosomal protein S10 p... 139 4e-33
AY480047-1|AAR95680.1| 4684|Homo sapiens plectin 6 protein. 130 4e-30
Z54367-1|CAA91196.1| 4684|Homo sapiens plectin protein. 125 1e-28
BC030568-1|AAH30568.1| 72|Homo sapiens LOC376693 protein protein. 95 2e-19
Z70761-1|CAA94807.1| 58|Homo sapiens ribosomal protein S10 pro... 45 1e-04
U07149-1|AAA16958.1| 346|Homo sapiens retinal degeneration slow... 31 2.3
M73531-1|AAA60260.1| 346|Homo sapiens retinal degeneration slow... 31 2.3
BC074720-1|AAH74720.1| 346|Homo sapiens peripherin 2 (retinal d... 31 2.3
AL049843-2|CAB75420.1| 346|Homo sapiens peripherin 2 (retinal d... 31 2.3
AK000857-1|BAA91400.1| 180|Homo sapiens protein ( Homo sapiens ... 31 2.3
BC089447-1|AAH89447.1| 981|Homo sapiens proline-rich transmembr... 31 3.0
BC040508-1|AAH40508.1| 597|Homo sapiens PRRT3 protein protein. 31 3.0
AK126796-1|BAC86698.1| 195|Homo sapiens protein ( Homo sapiens ... 31 3.0
AK090993-1|BAC03564.1| 667|Homo sapiens protein ( Homo sapiens ... 31 3.0
X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein. 29 9.2
X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for ... 29 9.2
M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipopr... 29 9.2
M17367-1|AAA51741.1| 728|Homo sapiens APOB protein. 29 9.2
M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein. 29 9.2
J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipopr... 29 9.2
AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (inclu... 29 9.2
AL356913-3|CAI22673.1| 631|Homo sapiens SH3-domain GRB2-like (e... 29 9.2
AL354978-7|CAH71847.1| 631|Homo sapiens SH3-domain GRB2-like (e... 29 9.2
AL139147-4|CAI21944.1| 631|Homo sapiens SH3-domain GRB2-like (e... 29 9.2
AF317634-1|AAL26903.1| 616|Homo sapiens HRD1 protein. 29 9.2
AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein. 29 9.2
AB085847-1|BAC24801.1| 616|Homo sapiens HRD1 protein. 29 9.2
AB058713-1|BAB47439.1| 579|Homo sapiens KIAA1810 protein protein. 29 9.2
>U14972-1|AAA85660.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 217 bits (531), Expect = 1e-56
Identities = 114/163 (69%), Positives = 128/163 (78%), Gaps = 8/163 (4%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 207
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 208 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 375
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 376 TAEDRSAYRR-APPAGAPHDKKADVGPGSA-DVEFRGGFGRGR 498
DR YRR A P GA DKKA+ G GSA + +FRGGFGRGR
Sbjct: 120 GEADRDTYRRSAVPPGA--DKKAEAGAGSATEFQFRGGFGRGR 160
>BX255972-2|CAH73100.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 217 bits (531), Expect = 1e-56
Identities = 114/163 (69%), Positives = 128/163 (78%), Gaps = 8/163 (4%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 207
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 208 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 375
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 376 TAEDRSAYRR-APPAGAPHDKKADVGPGSA-DVEFRGGFGRGR 498
DR YRR A P GA DKKA+ G GSA + +FRGGFGRGR
Sbjct: 120 GEADRDTYRRSAVPPGA--DKKAEAGAGSATEFQFRGGFGRGR 160
>BC073799-1|AAH73799.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 217 bits (531), Expect = 1e-56
Identities = 114/163 (69%), Positives = 128/163 (78%), Gaps = 8/163 (4%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 207
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 208 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 375
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 376 TAEDRSAYRR-APPAGAPHDKKADVGPGSA-DVEFRGGFGRGR 498
DR YRR A P GA DKKA+ G GSA + +FRGGFGRGR
Sbjct: 120 GEADRDTYRRSAVPPGA--DKKAEAGAGSATEFQFRGGFGRGR 160
>BC071946-1|AAH71946.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 217 bits (531), Expect = 1e-56
Identities = 114/163 (69%), Positives = 128/163 (78%), Gaps = 8/163 (4%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 207
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 208 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 375
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 376 TAEDRSAYRR-APPAGAPHDKKADVGPGSA-DVEFRGGFGRGR 498
DR YRR A P GA DKKA+ G GSA + +FRGGFGRGR
Sbjct: 120 GEADRDTYRRSAVPPGA--DKKAEAGAGSATEFQFRGGFGRGR 160
>BC070235-1|AAH70235.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 217 bits (531), Expect = 1e-56
Identities = 114/163 (69%), Positives = 128/163 (78%), Gaps = 8/163 (4%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 207
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 208 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 375
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 376 TAEDRSAYRR-APPAGAPHDKKADVGPGSA-DVEFRGGFGRGR 498
DR YRR A P GA DKKA+ G GSA + +FRGGFGRGR
Sbjct: 120 GEADRDTYRRSAVPPGA--DKKAEAGAGSATEFQFRGGFGRGR 160
>BC005012-1|AAH05012.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 217 bits (531), Expect = 1e-56
Identities = 114/163 (69%), Positives = 128/163 (78%), Gaps = 8/163 (4%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 207
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 208 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 375
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 376 TAEDRSAYRR-APPAGAPHDKKADVGPGSA-DVEFRGGFGRGR 498
DR YRR A P GA DKKA+ G GSA + +FRGGFGRGR
Sbjct: 120 GEADRDTYRRSAVPPGA--DKKAEAGAGSATEFQFRGGFGRGR 160
>BC001955-1|AAH01955.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 217 bits (531), Expect = 1e-56
Identities = 114/163 (69%), Positives = 128/163 (78%), Gaps = 8/163 (4%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 207
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 208 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 375
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 376 TAEDRSAYRR-APPAGAPHDKKADVGPGSA-DVEFRGGFGRGR 498
DR YRR A P GA DKKA+ G GSA + +FRGGFGRGR
Sbjct: 120 GEADRDTYRRSAVPPGA--DKKAEAGAGSATEFQFRGGFGRGR 160
>BC001032-1|AAH01032.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 217 bits (531), Expect = 1e-56
Identities = 114/163 (69%), Positives = 128/163 (78%), Gaps = 8/163 (4%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 207
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 208 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 375
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 376 TAEDRSAYRR-APPAGAPHDKKADVGPGSA-DVEFRGGFGRGR 498
DR YRR A P GA DKKA+ G GSA + +FRGGFGRGR
Sbjct: 120 GEADRDTYRRSAVPPGA--DKKAEAGAGSATEFQFRGGFGRGR 160
>AB209165-1|BAD92402.1| 174|Homo sapiens ribosomal protein S10
variant protein.
Length = 174
Score = 215 bits (526), Expect = 6e-56
Identities = 113/164 (68%), Positives = 128/164 (78%), Gaps = 8/164 (4%)
Frame = +1
Query: 31 KMLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVK 204
+MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVK
Sbjct: 9 QMLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVK 68
Query: 205 EQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPA 372
EQFAWRHFYWYLTNEGI+YLR +LHLPPEIVPA L+RS R ET R +G G RP
Sbjct: 69 EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRS-RPETGRPRPKGLEGERPARLT 127
Query: 373 RTAEDRSAYRR-APPAGAPHDKKADVGPGSA-DVEFRGGFGRGR 498
R DR YRR A P GA DKKA+ G GSA + +FRGGFGRGR
Sbjct: 128 RGEADRDTYRRSAVPPGA--DKKAEAGAGSATEFQFRGGFGRGR 169
>BX255972-3|CAH73101.1| 172|Homo sapiens ribosomal protein S10
protein.
Length = 172
Score = 200 bits (489), Expect = 2e-51
Identities = 107/155 (69%), Positives = 120/155 (77%), Gaps = 7/155 (4%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 207
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 208 QFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR---RGAVG-RPDAPAR 375
QFAWRHFYWYLTNEGI+YLR +LHLPPEIVPATL+RS R ET R +G G RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS-RPETGRPRPKGLEGERPARLTR 119
Query: 376 TAEDRSAYRR-APPAGAPHDKKADVGPGSADVEFR 477
DR YRR A P GA DKKA+ G GSA EF+
Sbjct: 120 GEADRDTYRRSAVPPGA--DKKAEAGAGSA-TEFQ 151
>AB007151-1|BAA25817.1| 78|Homo sapiens ribosomal protein S10
protein.
Length = 78
Score = 139 bits (337), Expect = 4e-33
Identities = 62/78 (79%), Positives = 70/78 (89%), Gaps = 2/78 (2%)
Frame = +1
Query: 55 RVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKEQFAWRHF 228
R++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKEQFAWRHF
Sbjct: 1 RIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHF 60
Query: 229 YWYLTNEGIEYLRIFLHL 282
YWYLTNEGI+YLR +LHL
Sbjct: 61 YWYLTNEGIQYLRDYLHL 78
>AY480047-1|AAR95680.1| 4684|Homo sapiens plectin 6 protein.
Length = 4684
Score = 130 bits (313), Expect = 4e-30
Identities = 67/127 (52%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPK-HPDLEKIPNLQVIKAMQSLKSRGYVKEQ 210
MLMP+ +IYE LF+EGVMVAKKD HP + + NLQV++AM SL++RG V+E
Sbjct: 5 MLMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVRET 64
Query: 211 FAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDR 390
FAW HFYWYLTNEGI +LR +LHLPPEIVPA+L+R R + A P A
Sbjct: 65 FAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTPHVQAVQGPLG 124
Query: 391 SAYRRAP 411
S +R P
Sbjct: 125 SPPKRGP 131
>Z54367-1|CAA91196.1| 4684|Homo sapiens plectin protein.
Length = 4684
Score = 125 bits (301), Expect = 1e-28
Identities = 65/127 (51%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPK-HPDLEKIPNLQVIKAMQSLKSRGYVKEQ 210
MLMP+ +IYE LF+EGVMVAKKD HP + + NLQV++AM SL++RG V+E
Sbjct: 5 MLMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVRET 64
Query: 211 FAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDR 390
FAW HF+WYLTNEGI +LR +LHLPPEIV A+L+R R + A P A
Sbjct: 65 FAWCHFFWYLTNEGIAHLRQYLHLPPEIVAASLQRVRRPVAMVMPARRTPHVQAVQGPLG 124
Query: 391 SAYRRAP 411
S +R P
Sbjct: 125 SPPKRGP 131
>BC030568-1|AAH30568.1| 72|Homo sapiens LOC376693 protein protein.
Length = 72
Score = 94.7 bits (225), Expect = 2e-19
Identities = 45/60 (75%), Positives = 52/60 (86%), Gaps = 2/60 (3%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 207
MLMPK+N ++IYE LFKEGVMVAKKD H PKHP+L + PNL+V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNWIAIYELLFKEGVMVAKKDVHMPKHPELADKNAPNLRVMKAMQSLKSRGYVKE 60
>Z70761-1|CAA94807.1| 58|Homo sapiens ribosomal protein S10
protein.
Length = 58
Score = 45.2 bits (102), Expect = 1e-04
Identities = 27/50 (54%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 355 RPDAPARTAEDRSAYRR-APPAGAPHDKKADVGPGSA-DVEFRGGFGRGR 498
RP R DR YRR A P GA DKKA+ G G + +FRGGFGRGR
Sbjct: 7 RPARLTRGEADRDTYRRSAVPPGA--DKKAEAGLGQQPEFQFRGGFGRGR 54
>U07149-1|AAA16958.1| 346|Homo sapiens retinal degeneration slow
protein protein.
Length = 346
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 174 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 43
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>M73531-1|AAA60260.1| 346|Homo sapiens retinal degeneration slow
protein protein.
Length = 346
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 174 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 43
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>BC074720-1|AAH74720.1| 346|Homo sapiens peripherin 2 (retinal
degeneration, slow) protein.
Length = 346
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 174 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 43
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>AL049843-2|CAB75420.1| 346|Homo sapiens peripherin 2 (retinal
degeneration, slow) protein.
Length = 346
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 174 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 43
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>AK000857-1|BAA91400.1| 180|Homo sapiens protein ( Homo sapiens
cDNA FLJ20850 fis, clone ADKA01542. ).
Length = 180
Score = 31.1 bits (67), Expect = 2.3
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 343 GAVGRPDAPARTAEDRSAYR-RAPPAGAPHDKKADVGPGSADVEFRGGFGRGR 498
G G R ++ +A R RA PAGA D GP + D + R G GR
Sbjct: 117 GGAGGGSRAGRASQAAAARRPRAQPAGAGADAAGHGGPAAVDGDARAGGAGGR 169
>BC089447-1|AAH89447.1| 981|Homo sapiens proline-rich transmembrane
protein 3 protein.
Length = 981
Score = 30.7 bits (66), Expect = 3.0
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 283 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAED-RSAYRRAPPAGA 423
PP P+T +R + T +R A+G+P P TA SA +PPA A
Sbjct: 407 PPVQAPSTSRRGLIRVTTQR-ALGQPPPPEPTASSMASAPASSPPANA 453
>BC040508-1|AAH40508.1| 597|Homo sapiens PRRT3 protein protein.
Length = 597
Score = 30.7 bits (66), Expect = 3.0
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 283 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAED-RSAYRRAPPAGA 423
PP P+T +R + T +R A+G+P P TA SA +PPA A
Sbjct: 23 PPVKAPSTSRRGLIRVTTQR-ALGQPPPPEPTASSMASAPASSPPANA 69
>AK126796-1|BAC86698.1| 195|Homo sapiens protein ( Homo sapiens
cDNA FLJ44846 fis, clone BRACE3051144. ).
Length = 195
Score = 30.7 bits (66), Expect = 3.0
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 125 LGAW*SFLATMTPSLKRYS 69
LG W FLAT+TPSLKR S
Sbjct: 177 LGRWTFFLATVTPSLKRSS 195
>AK090993-1|BAC03564.1| 667|Homo sapiens protein ( Homo sapiens
cDNA FLJ33674 fis, clone BRAWH2002047. ).
Length = 667
Score = 30.7 bits (66), Expect = 3.0
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 283 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAED-RSAYRRAPPAGA 423
PP P+T +R + T +R A+G+P P TA SA +PPA A
Sbjct: 407 PPVQAPSTSRRGLIRVTTQR-ALGQPPPPEPTASSMASAPASSPPANA 453
>X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein.
Length = 4560
Score = 29.1 bits (62), Expect = 9.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -3
Query: 346 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 233
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1830 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1867
>X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for
apolipoprotein B-100. ).
Length = 4563
Score = 29.1 bits (62), Expect = 9.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -3
Query: 346 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 233
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
>M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 (apoB) gene, exons 22 through 29. ).
Length = 4563
Score = 29.1 bits (62), Expect = 9.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -3
Query: 346 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 233
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
>M17367-1|AAA51741.1| 728|Homo sapiens APOB protein.
Length = 728
Score = 29.1 bits (62), Expect = 9.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -3
Query: 346 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 233
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 163 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 200
>M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein.
Length = 3262
Score = 29.1 bits (62), Expect = 9.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -3
Query: 346 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 233
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 552 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 589
>J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 mRNA, complete cds. ).
Length = 4563
Score = 29.1 bits (62), Expect = 9.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -3
Query: 346 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 233
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
>AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (including
Ag(x) antigen) protein.
Length = 4563
Score = 29.1 bits (62), Expect = 9.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -3
Query: 346 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 233
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
>AL356913-3|CAI22673.1| 631|Homo sapiens SH3-domain GRB2-like
(endophilin) interacting protein 1 protein.
Length = 631
Score = 29.1 bits (62), Expect = 9.2
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 280 LPPEIVPATLKRSVRTETVRRGAVGRPDAPAR-TAEDRSAYRRAPPAGAPHDKKADVG-P 453
LPP+ VPAT R+ T+ GA P PA RS PP P K G P
Sbjct: 219 LPPKNVPATPPRTGSPLTIGPGA-SSPARPATPLVPCRSTTPPPPPPRPPSRPKLPPGKP 277
Query: 454 GSADV 468
G DV
Sbjct: 278 GVGDV 282
>AL354978-7|CAH71847.1| 631|Homo sapiens SH3-domain GRB2-like
(endophilin) interacting protein 1 protein.
Length = 631
Score = 29.1 bits (62), Expect = 9.2
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 280 LPPEIVPATLKRSVRTETVRRGAVGRPDAPAR-TAEDRSAYRRAPPAGAPHDKKADVG-P 453
LPP+ VPAT R+ T+ GA P PA RS PP P K G P
Sbjct: 219 LPPKNVPATPPRTGSPLTIGPGA-SSPARPATPLVPCRSTTPPPPPPRPPSRPKLPPGKP 277
Query: 454 GSADV 468
G DV
Sbjct: 278 GVGDV 282
>AL139147-4|CAI21944.1| 631|Homo sapiens SH3-domain GRB2-like
(endophilin) interacting protein 1 protein.
Length = 631
Score = 29.1 bits (62), Expect = 9.2
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 280 LPPEIVPATLKRSVRTETVRRGAVGRPDAPAR-TAEDRSAYRRAPPAGAPHDKKADVG-P 453
LPP+ VPAT R+ T+ GA P PA RS PP P K G P
Sbjct: 219 LPPKNVPATPPRTGSPLTIGPGA-SSPARPATPLVPCRSTTPPPPPPRPPSRPKLPPGKP 277
Query: 454 GSADV 468
G DV
Sbjct: 278 GVGDV 282
>AF317634-1|AAL26903.1| 616|Homo sapiens HRD1 protein.
Length = 616
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 494 PLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASG 357
P+P PP + + P TSA LS ++A A ASG
Sbjct: 393 PVPPPPSSGEAVAPPSTSAALSRPSGAATTTAAGTSATAASATASG 438
>AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein.
Length = 3929
Score = 29.1 bits (62), Expect = 9.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -3
Query: 346 HHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNT 233
++++ +YA++S+ L ++ + K G+++ H LNT
Sbjct: 1833 NNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNT 1870
>AB085847-1|BAC24801.1| 616|Homo sapiens HRD1 protein.
Length = 616
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 494 PLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASG 357
P+P PP + + P TSA LS ++A A ASG
Sbjct: 393 PVPPPPSSGEAVAPPSTSAALSRPSGAATTTAAGTSATAASATASG 438
>AB058713-1|BAB47439.1| 579|Homo sapiens KIAA1810 protein protein.
Length = 579
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 494 PLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASG 357
P+P PP + + P TSA LS ++A A ASG
Sbjct: 356 PVPPPPSSGEAVAPPSTSAALSRPSGAATTTAAGTSATAASATASG 401
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,411,991
Number of Sequences: 237096
Number of extensions: 1479737
Number of successful extensions: 4541
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 4258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4503
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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