Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J19
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 121 9e-29
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz... 59 4e-10
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 59 5e-10
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 38 0.001
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ... 36 0.004
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 31 0.12
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 27 1.5
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 3.4
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 25 7.7
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 25 7.7
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 121 bits (291), Expect = 9e-29
Identities = 62/107 (57%), Positives = 79/107 (73%)
Frame = +1
Query: 241 IDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDEHTCTV 420
IDE LYSRQLYVLGH+AM++M+ S+VLI G GLGVEIAKNV L GVKSVTL+D +
Sbjct: 15 IDEGLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRI 74
Query: 421 GDLSSQFYLSENMIGQNRAIASCEQLSELNHYVPTTAHTGPLTEEFL 561
DLSSQ++L+E+ IG RA + +L+ELN YVP + L+ E+L
Sbjct: 75 EDLSSQYFLTEDDIGVPRAKVTVSKLAELNQYVPVSV-VDELSTEYL 120
>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
Rad31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 59.3 bits (137), Expect = 4e-10
Identities = 34/101 (33%), Positives = 54/101 (53%)
Frame = +1
Query: 250 SLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDEHTCTVGDL 429
+LY RQ+ + G +A + + S VL+ L EIAKN++L G+ + + D T D+
Sbjct: 12 ALYDRQIRLWGFNAQQALKQSRVLLITASPLANEIAKNLVLSGIGKLCVLDSMTVYEKDV 71
Query: 430 SSQFYLSENMIGQNRAIASCEQLSELNHYVPTTAHTGPLTE 552
QF++ + IGQ RA ++L ELN V T ++E
Sbjct: 72 EEQFFIEASDIGQLRANVFKKKLHELNPLVEIDTDTSLISE 112
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 58.8 bits (136), Expect = 5e-10
Identities = 29/90 (32%), Positives = 50/90 (55%)
Frame = +1
Query: 286 DAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDEHTCTVGDLSSQFYLSENMIG 465
+A+R S+ VL+ G GG+G E+ KN+++ GVK V + D T + +L+ QF + +
Sbjct: 18 EALRNFKSAKVLLVGAGGIGCELLKNLLMSGVKEVHIIDLDTIDLSNLNRQFLFRKKHVK 77
Query: 466 QNRAIASCEQLSELNHYVPTTAHTGPLTEE 555
Q +AI + + S N V A+ + E+
Sbjct: 78 QPKAIVAAKTASSFNPNVKLEAYHANIKED 107
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/106 (18%), Positives = 46/106 (43%)
Frame = +1
Query: 214 NNGARVDDEIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVT 393
+ G D+ + +R G D M R+ +S V++ G GG+G + + GV+ +
Sbjct: 95 SKGVPYDENLIREQLARNYAFFGEDGMERLRNSFVIVVGCGGVGSWVINMLARSGVQKIR 154
Query: 394 LHDEHTCTVGDLSSQFYLSENMIGQNRAIASCEQLSELNHYVPTTA 531
+ D ++ L+ + +G + +A + + + ++ A
Sbjct: 155 IVDFDQVSLSSLNRHSIATLQDVGTPKTLAIKKAIKKFAPWIEVDA 200
>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 35.9 bits (79), Expect = 0.004
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = +1
Query: 256 YSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDEHTCTVGDLSS 435
Y RQ+ + + + S V + +G E KN+IL G+ S + D+ +
Sbjct: 10 YDRQVRLWKAEGQNAIEKSHVCLLYANTVGCEALKNLILPGIGSFAVVDDTSVDFSMDGM 69
Query: 436 QFYLSENMIGQNRAIASCEQLSELN 510
F++ + G++RA + L +LN
Sbjct: 70 NFFIQYDQEGKSRARCTASLLQQLN 94
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 31.1 bits (67), Expect = 0.12
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 298 RMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDEHT 411
R+ +S L+ G G LG +A+N++ GV+ VT D T
Sbjct: 332 RIQNSKCLLLGAGTLGCGVARNLLSWGVRHVTFVDYST 369
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 160 KKRKLNTGEAQSNNTAMANNGARVDDEI-DESLYSRQLYVLGHDAMRRMASSDVLISGLG 336
+ R + + Q+ NT M N G + +DE+ D SLY + Y D A+ VL +
Sbjct: 205 RSRYASHPDLQALNTWMTNEGNQANDEMEDVSLYLEERYGRNLDLSLATAAKLVLRRRIA 264
Query: 337 G 339
G
Sbjct: 265 G 265
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 3.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -3
Query: 539 PVCAVVGT*WFSSDNCSHDAIA-LFCPIMFSDR*NCDDKSPTVHVC 405
PV V W S + S+D + L CPI + D D+K T C
Sbjct: 82 PVKRAVKEAWDSFEPLSNDQLMDLTCPICYDDMNENDEKQATKMPC 127
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 229 VDDEIDESLYSRQ 267
+DDE+DES YS Q
Sbjct: 645 IDDEVDESKYSEQ 657
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 365 TFLAISTPRPPSPEIRTSELAIRRIAS*PSTYSWREYKLSSISSS 231
TF+ IST + + +L+I +S S YS ++++SSS
Sbjct: 59 TFVPISTHTSSATNTTSGQLSISSSSSTSSEYSSSSIPITTVSSS 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,380
Number of Sequences: 5004
Number of extensions: 50638
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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