Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J19
(568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 121 4e-28
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 119 2e-27
U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula (ubiq... 61 6e-10
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 54 9e-08
AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical ... 45 3e-05
Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 42 3e-04
U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical p... 34 0.062
Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical p... 33 0.14
Z82096-6|CAD98732.2| 124|Caenorhabditis elegans Hypothetical pr... 33 0.19
U60979-2|AAC47278.1| 119|Caenorhabditis elegans CES-2 region pi... 33 0.19
Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 31 0.76
AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 31 0.76
AC024810-10|AAF60767.1| 165|Caenorhabditis elegans Hypothetical... 29 1.8
U41543-11|AAP40530.1| 362|Caenorhabditis elegans Hypothetical p... 29 2.3
U41543-9|AAB37021.2| 453|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical p... 28 5.4
Z81481-9|CAD54126.1| 587|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z81474-8|CAB03905.2| 587|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 27 7.1
AL021492-14|CAA16388.2| 473|Caenorhabditis elegans Hypothetical... 27 7.1
Z73911-5|CAL49431.1| 329|Caenorhabditis elegans Hypothetical pr... 27 9.4
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 27 9.4
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 27 9.4
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 27 9.4
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 27 9.4
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 121 bits (291), Expect = 4e-28
Identities = 60/127 (47%), Positives = 81/127 (63%)
Frame = +1
Query: 181 GEAQSNNTAMANNGARVDDEIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAK 360
GE + G D+ +D++LYSRQ+Y LG AM + ++ VLISGLG +GVEIAK
Sbjct: 83 GEKMDTSNNAGGVGGNSDELLDKNLYSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAK 142
Query: 361 NVILGGVKSVTLHDEHTCTVGDLSSQFYLSENMIGQNRAIASCEQLSELNHYVPTTAHTG 540
N+ILGGV+ VT+HD DLS+Q+YL + +G NRA + E+L+ELN V T
Sbjct: 143 NLILGGVRHVTIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVNVQVSTD 202
Query: 541 PLTEEFL 561
LTEEF+
Sbjct: 203 ELTEEFV 209
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 119 bits (286), Expect = 2e-27
Identities = 58/114 (50%), Positives = 78/114 (68%)
Frame = +1
Query: 220 GARVDDEIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLH 399
G D+ +D++LYSRQ+Y LG AM + ++ VLISGLG +GVEIAKN+ILGGV+ VT+H
Sbjct: 11 GGNSDELLDKNLYSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLILGGVRHVTIH 70
Query: 400 DEHTCTVGDLSSQFYLSENMIGQNRAIASCEQLSELNHYVPTTAHTGPLTEEFL 561
D DLS+Q+YL + +G NRA + E+L+ELN V T LTEEF+
Sbjct: 71 DTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVNVQVSTDELTEEFV 124
>U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula
(ubiquitin activating)homolog protein 1 protein.
Length = 541
Score = 60.9 bits (141), Expect = 6e-10
Identities = 32/98 (32%), Positives = 54/98 (55%)
Frame = +1
Query: 256 YSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDEHTCTVGDLSS 435
Y RQ+ + G + + S+ + G L EI K+++L GV+S + D+ D+
Sbjct: 10 YDRQVRLWGEEGQASIGSTSACVLGSDSLATEILKSLVLAGVQSFYVVDDAKVEQADIGQ 69
Query: 436 QFYLSENMIGQNRAIASCEQLSELNHYVPTTAHTGPLT 549
F+L + IG++RA A+ E+L+ELN V +A + P T
Sbjct: 70 NFFLHADDIGRSRAEATLEKLTELNPSVSGSASSQPPT 107
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 53.6 bits (123), Expect = 9e-08
Identities = 27/96 (28%), Positives = 51/96 (53%)
Frame = +1
Query: 247 ESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDEHTCTVGD 426
+S Y +V G + + ++ +L+ G GGLG E+ KN+ L G +++ + D T V +
Sbjct: 22 DSAYKVPWFVPGPENFEALQNTKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSN 81
Query: 427 LSSQFYLSENMIGQNRAIASCEQLSELNHYVPTTAH 534
L+ QF E+ +G+++A + + + TAH
Sbjct: 82 LNRQFLFRESDVGKSKAEVAAAFVQQRVVGCQVTAH 117
>AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical
protein F42G8.6 protein.
Length = 402
Score = 45.2 bits (102), Expect = 3e-05
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = +1
Query: 244 DESLYSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDEHTCT 417
D YSRQL V G + + + +VLI G GGLG +A + G+ ++ + D +
Sbjct: 14 DAGRYSRQLLVDDFGVSGQKNLKNLNVLIVGAGGLGCPVATYLGAAGIGTIGIVDYDHIS 73
Query: 418 VGDLSSQFYLSENMIGQNRAIASCEQLSELNHYVPTTAHTGPL 546
+ +L Q E+ +G+++A A + + N + H L
Sbjct: 74 LDNLHRQVAYKEDQVGKSKAQALADNIKLQNSDLNVQVHNTSL 116
>Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical
protein C08B6.9 protein.
Length = 343
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/66 (31%), Positives = 36/66 (54%)
Frame = +1
Query: 244 DESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDEHTCTVG 423
++++Y RQ+ + G +A ++ +S VLI G LG E+AK + L GV + L D
Sbjct: 7 EQAIYDRQIRLWGMEAQNKIRNSKVLIIGGKQLGAEVAKTLSLAGVDEMHLVDHRLVDTE 66
Query: 424 DLSSQF 441
++ F
Sbjct: 67 EIGMNF 72
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/69 (24%), Positives = 38/69 (55%)
Frame = +1
Query: 298 RMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDEHTCTVGDLSSQFYLSENMIGQNRA 477
++ S +L+ G GG+G E+ KN+ + G + V + D T + +L+ QF + + ++A
Sbjct: 10 KIVQSKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNRQFLFRKEHVSSSKA 69
Query: 478 IASCEQLSE 504
+ + + +
Sbjct: 70 ATATQVVKQ 78
>U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical
protein T03F1.1 protein.
Length = 419
Score = 34.3 bits (75), Expect = 0.062
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Frame = +1
Query: 241 IDESLYSRQLYV--LGH-DAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDEHT 411
+D + YSR + + +G + R+ V + G+GG+G +A+ + G+ + L D
Sbjct: 59 VDSNPYSRLMALQRMGIVNEYERIREKTVAVVGVGGVGSVVAEMLTRCGIGKLILFDYDK 118
Query: 412 CTVGDLSSQFYLSENMIGQNRAIASCEQLSELNHYVPTTAHTGPLT 549
+ +++ FY N G ++ A+ + L +N V H +T
Sbjct: 119 VEIANMNRLFY-QPNQAGLSKVEAARDTLIHVNPDVQIEVHNFNIT 163
>Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 239 SSSTRAPLFAIAVLLDCASPVFSFRFFTGGSTELSATSALDIGHERAQFCQNFGL 75
+++T + L I VLL CA + + S EL T+ I + AQ C FG+
Sbjct: 417 TTATFSVLIRIGVLLSCAMTSQAIIVASIASNELMPTAIRSISYSTAQLCSRFGI 471
>Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 239 SSSTRAPLFAIAVLLDCASPVFSFRFFTGGSTELSATSALDIGHERAQFCQNFGL 75
+++T + L I VLL CA + + S EL T+ I + AQ C FG+
Sbjct: 417 TTATFSVLIRIGVLLSCAMTSQAIIVASIASNELMPTAIRSISYSTAQLCSRFGI 471
>Z82096-6|CAD98732.2| 124|Caenorhabditis elegans Hypothetical
protein ZK909.6 protein.
Length = 124
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 94 NCARSCPMS-SAEVADNSVDPPVKKRKLNTGEAQSNNTAMANNGARVDDEIDESLY 258
N +SC +AE ++ PP L T A S N NG VDD ++ +Y
Sbjct: 63 NIRKSCVQKQNAEKSEEETSPPSSDADLPTSLADSFNDTTPYNGTIVDDRMEVKIY 118
>U60979-2|AAC47278.1| 119|Caenorhabditis elegans CES-2 region
pioneer protein.
Length = 119
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 94 NCARSCPMS-SAEVADNSVDPPVKKRKLNTGEAQSNNTAMANNGARVDDEIDESLY 258
N +SC +AE ++ PP L T A S N NG VDD ++ +Y
Sbjct: 58 NIRKSCVQKQNAEKSEEETSPPSSDADLPTSLADSFNDTTPYNGTIVDDRMEVKIY 113
>Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 30.7 bits (66), Expect = 0.76
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +1
Query: 292 MRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDEHTCTVGD--LSSQFYLSENMIG 465
+ R + VLI G G LG IA+ +I GV+ ++ D T + + S + +G
Sbjct: 319 LERYSQLKVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEFEDARLG 378
Query: 466 QNRAIASCEQLSELNHYVPTTAH 534
+ +A + + + + TAH
Sbjct: 379 RGKAETAQAAIQRIFPSIQATAH 401
>AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 30.7 bits (66), Expect = 0.76
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +1
Query: 292 MRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDEHTCTVGD--LSSQFYLSENMIG 465
+ R + VLI G G LG IA+ +I GV+ ++ D T + + S + +G
Sbjct: 319 LERYSQLKVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEFEDARLG 378
Query: 466 QNRAIASCEQLSELNHYVPTTAH 534
+ +A + + + + TAH
Sbjct: 379 RGKAETAQAAIQRIFPSIQATAH 401
>AC024810-10|AAF60767.1| 165|Caenorhabditis elegans Hypothetical
protein Y54E10A.13 protein.
Length = 165
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 410 VCSSCKVTDFTPPRMTFLAISTPRPPSPEIRT-SELAIRRIAS*PSTYSWREYKLSSISS 234
+C S + + R + ++S PRP SP IR+ S + + + S R SSI
Sbjct: 76 LCGSAGTSTVSATRSSHCSVSLPRPSSPSIRSNSSVPTASGGARNGSPSTRSSTSSSIQG 135
Query: 233 STRAP 219
S AP
Sbjct: 136 SPIAP 140
>U41543-11|AAP40530.1| 362|Caenorhabditis elegans Hypothetical
protein F46H5.2b protein.
Length = 362
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 112 PMSSAEVADNSVDPPVKK---RKLNTGEAQSNNTAMANNGARVDDEI 243
P+SS V D + P K K + + + M++NG VDD++
Sbjct: 296 PLSSVSVGDQEENSPSVKDAEEKTTDNDEEMQDVEMSDNGTEVDDDL 342
>U41543-9|AAB37021.2| 453|Caenorhabditis elegans Hypothetical
protein F46H5.2a protein.
Length = 453
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 112 PMSSAEVADNSVDPPVKK---RKLNTGEAQSNNTAMANNGARVDDEI 243
P+SS V D + P K K + + + M++NG VDD++
Sbjct: 387 PLSSVSVGDQEENSPSVKDAEEKTTDNDEEMQDVEMSDNGTEVDDDL 433
>Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical
protein F54D5.14 protein.
Length = 1130
Score = 27.9 bits (59), Expect = 5.4
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +1
Query: 154 PVKKRKLNTGE--AQSNNTA---MANNGARVDDEID-ESLYSRQLYVLGHDAMRRMASSD 315
P KK KL+TGE A S A + N + +ID ++ + Y+ G + + A
Sbjct: 10 PAKKAKLDTGERIAVSGRVASVKLTNFMCHANLQIDFKTAQNNCFYIGGPNGSGKSALFA 69
Query: 316 VLISGLGGLGVEIAK-NVILGGVKSVTLHDEHTCTV 420
+ GLGG G + + N + +K T + T T+
Sbjct: 70 AINLGLGGRGSDNDRGNTVKSYIKDGTTQSKITITL 105
>Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical
protein F54D5.14 protein.
Length = 1130
Score = 27.9 bits (59), Expect = 5.4
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +1
Query: 154 PVKKRKLNTGE--AQSNNTA---MANNGARVDDEID-ESLYSRQLYVLGHDAMRRMASSD 315
P KK KL+TGE A S A + N + +ID ++ + Y+ G + + A
Sbjct: 10 PAKKAKLDTGERIAVSGRVASVKLTNFMCHANLQIDFKTAQNNCFYIGGPNGSGKSALFA 69
Query: 316 VLISGLGGLGVEIAK-NVILGGVKSVTLHDEHTCTV 420
+ GLGG G + + N + +K T + T T+
Sbjct: 70 AINLGLGGRGSDNDRGNTVKSYIKDGTTQSKITITL 105
>Z81481-9|CAD54126.1| 587|Caenorhabditis elegans Hypothetical
protein C18D4.8 protein.
Length = 587
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 91 QNCARSCPMSSAEVADNSVDPPVKKRKLNTGEAQSNNTAMANNGARVDDEIDESLYS 261
Q+C + + E+A + + +KK K NT + N AM N ++ E E +S
Sbjct: 471 QDCVK---YTDEEIAKSDANVKIKKEKSNTWQISGGNLAMTLNDLKIMLEGSELEFS 524
>Z81474-8|CAB03905.2| 587|Caenorhabditis elegans Hypothetical
protein C18D4.8 protein.
Length = 587
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 91 QNCARSCPMSSAEVADNSVDPPVKKRKLNTGEAQSNNTAMANNGARVDDEIDESLYS 261
Q+C + + E+A + + +KK K NT + N AM N ++ E E +S
Sbjct: 471 QDCVK---YTDEEIAKSDANVKIKKEKSNTWQISGGNLAMTLNDLKIMLEGSELEFS 524
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 235 DEIDESLYSRQLYVLGHD--AMRRMASSDVLISGLGGLGVEIAKNVIL--GGVKSVTLHD 402
D++ SL ++ VL D +RR +S +L+SG GLG ++ G ++ ++
Sbjct: 304 DDLLASLGEKEREVLHMDNGKIRRPSSKMLLLSGPAGLGKSTLARIVARQAGYSTIDVNA 363
Query: 403 EHTCTVGDLS 432
TV DL+
Sbjct: 364 SDARTVADLN 373
>AL021492-14|CAA16388.2| 473|Caenorhabditis elegans Hypothetical
protein Y45F10D.13a protein.
Length = 473
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/74 (20%), Positives = 34/74 (45%)
Frame = +1
Query: 109 CPMSSAEVADNSVDPPVKKRKLNTGEAQSNNTAMANNGARVDDEIDESLYSRQLYVLGHD 288
C + +V +D + K+ + Q + ++ + R+ + +DE+ S LY+ D
Sbjct: 2 CDLPKKDVEFKEIDAIYENMKIKNSQRQRSQNSL--DLIRITNNLDETTKSLNLYLQQID 59
Query: 289 AMRRMASSDVLISG 330
A + + S ++ G
Sbjct: 60 ATWKRSKSQPIMKG 73
>Z73911-5|CAL49431.1| 329|Caenorhabditis elegans Hypothetical
protein T12A7.4a protein.
Length = 329
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 340 LGVEIAKNVILGGVKSVTLHDEHTCTVG-DLSSQFYLSENMIGQNRAIASC 489
+GV +A+ VILGG + D+ +C +G L ++ + + G N + +C
Sbjct: 157 MGVTLARKVILGGYINA---DDGSCNIGKPLGNKVRVILGIAGANFGLCAC 204
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = -3
Query: 377 PPRMTFLAISTPRPPSPEIRTSELAIRRIAS*PSTYSWREYKLSSISSSTRAPL 216
PP L S P PP P + ++E+ + + Y+ + + SI+++ + P+
Sbjct: 17 PPASVVLHPSAPPPPPPPLSSTEVVGNTTTTTTTHYAPKTWNDPSITTAPKIPV 70
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = -3
Query: 377 PPRMTFLAISTPRPPSPEIRTSELAIRRIAS*PSTYSWREYKLSSISSSTRAPL 216
PP L S P PP P + ++E+ + + Y+ + + SI+++ + P+
Sbjct: 17 PPASVVLHPSAPPPPPPPLSSTEVVGNTTTTTTTHYAPKTWNDPSITTAPKIPV 70
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = -3
Query: 377 PPRMTFLAISTPRPPSPEIRTSELAIRRIAS*PSTYSWREYKLSSISSSTRAPL 216
PP L S P PP P + ++E+ + + Y+ + + SI+++ + P+
Sbjct: 17 PPASVVLHPSAPPPPPPPLSSTEVVGNTTTTTTTHYAPKTWNDPSITTAPKIPV 70
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = -3
Query: 377 PPRMTFLAISTPRPPSPEIRTSELAIRRIAS*PSTYSWREYKLSSISSSTRAPL 216
PP L S P PP P + ++E+ + + Y+ + + SI+++ + P+
Sbjct: 17 PPASVVLHPSAPPPPPPPLSSTEVVGNTTTTTTTHYAPKTWNDPSITTAPKIPV 70
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,199,168
Number of Sequences: 27780
Number of extensions: 308943
Number of successful extensions: 1025
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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