Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J19
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   0.40 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   0.93 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   2.1  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 154 PVKKRKLNTGEAQSNNTAMANNGARVDDEIDESLYSRQ 267
           P+K+R +    A++N+T    +G ++  +I  ++Y RQ
Sbjct: 332 PLKRRNIEI-VAKNNDTLQFISGIKIIKQISSNIYERQ 368


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 257 YKLSSISSSTRAPLFAIAVLLD 192
           YK+   +  T AP+F IAV +D
Sbjct: 50  YKVVDQTGPTHAPIFTIAVQID 71


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 121 SAEVADNSVDPPVKKRKLNTGEAQSNNTAMANNGARVDDEIDESLYSRQ 267
           ++ + DN    P++    N+G A  NN   +++GA   D    S  S +
Sbjct: 233 NSPLEDNIKCEPLELTGGNSGNAAGNNEDSSDSGAAASDRPPASASSNE 281


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 197 TTQQWRTMERAWMTRLTKVCILASCTCSV 283
           TT Q R ++ A + +  ++CIL S TC++
Sbjct: 141 TTLQNR-LDEAILIKNERICILKSITCAL 168


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 353 ISTPRPPSPEIR 318
           IS PRPP P +R
Sbjct: 105 ISQPRPPHPRLR 116



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 353 ISTPRPPSPEIR 318
           IS PRPP P +R
Sbjct: 161 ISQPRPPHPRLR 172


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 82   KFWQNCARSCPMSSAEVADNSVDPPVKKRKLNT 180
            +FW+    + P +     ++   P V KR +NT
Sbjct: 1195 RFWERLRYAIPSAGDISIESKSSPLVYKRNINT 1227



 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 445  LSENMIGQNRAIASCEQLSELNHYVPTTAH 534
            L E  +G N     C+ L EL+ +V   AH
Sbjct: 916  LVELSLGSNPWSCRCKFLQELSSWVSDNAH 945


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,247
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)