Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J18
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   5.2  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   6.8  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    25   9.0  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    25   9.0  

>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 212  RYFGEIVQKVGDDLYAYGSKPIALILKTTGLP 307
            RY  +++ KV + +Y  G +  +++++ TG P
Sbjct: 1343 RYLPKLITKVEEIVYEAGLQKDSIVMRMTGCP 1374


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -1

Query: 271 FTAVSI*IITNFLHNFAEITI*YHRHHSS*L----M*HFKILLNNYAVVPLYNDHFSCIN 104
           FT V   I+   LH++  +T  +HR  S  L    + H + L+  ++   L+   F C+N
Sbjct: 360 FTIVESQILPCVLHSYETLTNVFHRDDSKHLYESAVDHGRRLIMKFSDSELHTFLFHCVN 419

Query: 103 R 101
           +
Sbjct: 420 K 420


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +2

Query: 233 QKVGDDLYAYGSKPIALILKTTGLPRSQVVDSLRTLLKFDLATFEPSVNELVADY 397
           +++  DL+    KP+  +LK + L +S++ D    ++    +T  P V EL+  +
Sbjct: 333 EEINMDLFKKTLKPVEQVLKDSNLKKSEIDD----IVLVGGSTRIPKVQELLESF 383


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 290 KTTGLPRSQVVDSLRTLLKFDLATFEPSVNELVADYKL 403
           KTT  P+ QV   +  ++  D +  EP +N   A   L
Sbjct: 158 KTTSYPQFQVRQFVSPIISIDNSALEPFLNRYPASESL 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,487
Number of Sequences: 5004
Number of extensions: 40032
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)