Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J18
         (523 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.5  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   3.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 401 LVSENVLLLIRYPRYLLQIKSKYGSDA 481
           L SENV +L+ +   L+++    G+DA
Sbjct: 118 LTSENVEILLEHSSKLVELFLSLGADA 144


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 442 SGISDEKQDIFRNKFV 395
           SGI ++K+D FRN  +
Sbjct: 37  SGIDEKKEDDFRNGII 52


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 448 KISGISDEKQDIFRNKFVICYQ 383
           KIS +S +KQ + +   V C +
Sbjct: 371 KISNLSFDKQSLLKENTVTCQE 392


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 518 IWPAVAILQQVTLHHSHICF 459
           I+P + ++  V LH   ICF
Sbjct: 7   IFPVLFVIINVLLHGQVICF 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,475
Number of Sequences: 438
Number of extensions: 2644
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)