Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J17
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    78   1e-15
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    27   2.6  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   2.6  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   4.5  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   7.9  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 34/62 (54%), Positives = 46/62 (74%)
 Frame = +1

Query: 385 GKAILPRVAAKLDVSPITDIIGVKDANTFVRTIYAGNAILTLEAKDPVKVITVRSTAFPP 564
           GK ++PR+AA  DV  I+DIIGV  A+TFVR  YAGN  +T+  KDP+K++TVR++AF  
Sbjct: 125 GKGVMPRLAAMFDVMQISDIIGVVSADTFVRPTYAGNVNVTVSTKDPIKIVTVRASAFDA 184

Query: 565 EP 570
            P
Sbjct: 185 AP 186



 Score = 54.8 bits (126), Expect = 9e-09
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
 Frame = +3

Query: 54  SSRHLFLTAQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAAD 233
           SS +  +    R   S L L EH    LSPA+ +A+ AAK+ GG++   V+G      + 
Sbjct: 14  SSSNFKINCGRRHWFSVLTLLEHQGGNLSPASLSAVEAAKRTGGDVFGFVIGKDSSQISQ 73

Query: 234 KIAKA-NGVAKVLVAESDAFKGFTAESITPLILATQKQFNFTHILAPAH 377
           K+AK+ N + KV+  E+ +++    + I  ++    K+   +H+ + AH
Sbjct: 74  KVAKSVNDLKKVIYVENPSYEHNIPDQIANVLFENVKKNEISHVFS-AH 121


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 528 HRILCFQSKNSITCINCSHKGVSIFDTDNIS 436
           HRI     KN +TC++C  + V++    +IS
Sbjct: 262 HRIFSGSLKNVVTCLDCKKERVAVDPLMDIS 292


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +1

Query: 334 HRSNLILPISWLPLTAFGKAILPRVAAKLDVSPITDIIGVKDANTFVRTIYAGNAILTLE 513
           H+ + I+P SW+  T   K +  R+    D   + +     +   F+    AG    T  
Sbjct: 86  HQHDSIIPASWIHDTPHMKLVFHRLQNLPDGDLLLENDPKNNVGYFISGGIAGIVSRTCT 145

Query: 514 AK-DPVKVITVRSTAFPPEP 570
           A  D +KV+ +  T   P P
Sbjct: 146 APLDRLKVMLISDTGSKPSP 165


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 422  MCHLSLILSVSKMLTPL*EQFMQVMLFLL 508
            +CHL L L +  +L P  +++  +MLF L
Sbjct: 1781 LCHLLLFLMLPVLLIPFIDRWHSMMLFWL 1809


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 220 PHFVPTTSTDISPPIFLAAVS 158
           P F+P     ++PP+  AAVS
Sbjct: 132 PVFIPQVGMSVAPPVATAAVS 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,671
Number of Sequences: 5004
Number of extensions: 42511
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)