Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J17
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875...    70   1e-12
03_02_0993 - 13058785-13059025,13059188-13059264,13062157-130623...    37   0.013
12_02_0479 - 19522172-19523158                                         29   3.5  
02_05_0160 - 26382377-26382874                                         29   3.5  
11_01_0162 - 1330878-1331012,1331379-1331448,1331599-1331762,133...    28   6.1  
07_03_1621 + 28187846-28187915,28189214-28189293,28189485-281895...    27   8.0  
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869...    27   8.0  

>03_06_0581 +
           34886728-34886817,34886990-34887175,34887332-34887543,
           34888161-34888318,34888615-34888773,34888921-34888973,
           34889265-34889405,34889788-34889823,34890542-34890776,
           34891017-34891144
          Length = 465

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 33/65 (50%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
 Frame = +1

Query: 376 TAFGKAILPRVAAKLDVSPITDIIGVKDANTFVRTIYAGNAILTLE--AKDPVKVITVRS 549
           T+FGK +LPR AA LDVSP+TD+  + +   FVR IYAGNA+ T+    +DP  ++++RS
Sbjct: 130 TSFGKNLLPRAAALLDVSPVTDVTSISEPRVFVRPIYAGNALCTVRYTGEDPC-MMSIRS 188

Query: 550 TAFPP 564
           T+F P
Sbjct: 189 TSFSP 193



 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 38/106 (35%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
 Frame = +3

Query: 84  LRRLQSTLVLAEHNNEVLSPATQNALTAAKKIG---GEISVLVVGTKCG--PAADKIAKA 248
           L R  STLV+AEH    + P++ +AL AA+ IG     +S+L+ G+  G   AA+  A +
Sbjct: 27  LPRPVSTLVVAEHEGGFVKPSSLSALAAAEAIGKDDNRVSLLLGGSGPGLHKAAEHAASS 86

Query: 249 NG-VAKVLVAESDAFKGFTAESITPLILATQKQFNFTHILAPAHCF 383
           +  V++VLVA+SD F    AE    L+ + Q +  ++H++A +  F
Sbjct: 87  HPLVSEVLVADSDVFAHPLAEPWAELLRSVQHKGGYSHVIASSTSF 132


>03_02_0993 -
           13058785-13059025,13059188-13059264,13062157-13062351,
           13062650-13062811,13062915-13063044,13063082-13063149,
           13063244-13063291,13063383-13063448,13063739-13063818,
           13064644-13064737
          Length = 386

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +3

Query: 114 AEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPA 227
           + +NN +L PA  NA+  A+K+ G+IS++V G   G A
Sbjct: 169 SSYNNTLLRPAIANAVHKARKLYGDISIIVTGHSMGGA 206


>12_02_0479 - 19522172-19523158
          Length = 328

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 563 GGKAVLRTVITFTGSFASRVRIALPA 486
           G +AVLR V+   G  A+ V +ALPA
Sbjct: 226 GARAVLRAVLLVRGDAATAVAVALPA 251


>02_05_0160 - 26382377-26382874
          Length = 165

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 217 HFVPTTSTDISPPIFLAAVSAFWVAGDNTSLLCSAKTNVLCKRRSC 80
           H   ++ST I+PP   AAVS   +  DN    CSA T++  +   C
Sbjct: 40  HGAWSSSTMITPPPRGAAVSKLGILSDN-GAFCSAPTHLSSQSHRC 84


>11_01_0162 -
           1330878-1331012,1331379-1331448,1331599-1331762,
           1332879-1332919,1333068-1333160,1333250-1333337,
           1333615-1333668,1333759-1333874,1334059-1334136,
           1334280-1334430,1334500-1334610
          Length = 366

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 518 FASRVRIALPA*IVLTKVLASLTPIISVIGDTSSLAATLGKI 393
           F S V  +LP    +T+++AS  P+  ++G   SL+ TLG +
Sbjct: 167 FESTVGASLPVIASVTRIIASGDPVSRIVG---SLSGTLGYV 205


>07_03_1621 +
           28187846-28187915,28189214-28189293,28189485-28189550,
           28189801-28189848,28189967-28190034,28190107-28190179,
           28190284-28190445,28190620-28190814,28191114-28191190,
           28191280-28191481
          Length = 346

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 114 AEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPA 227
           + +NN +L  A  +A+  A++  G+I+V+V G   G A
Sbjct: 142 SSYNNTILRLAITSAVHKARQSYGDINVIVTGHSMGGA 179


>01_01_1098 -
           8691312-8692430,8692640-8693509,8694522-8696105,
           8696199-8696258,8696336-8696414,8696494-8696555,
           8697129-8697204,8697367-8697419,8698181-8698270,
           8698411-8698458
          Length = 1346

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 362 LGSRSLLLARLFC---RGWLPNLMCHLSLILSVSKM 460
           L  ++LL   L C   R WLP+  C+  L+ +V ++
Sbjct: 840 LRGKTLLFVALLCKNSRRWLPHFFCNAKLLSAVDRL 875


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,150,858
Number of Sequences: 37544
Number of extensions: 285019
Number of successful extensions: 695
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)