Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J17
         (573 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J04058-1|AAA52406.1|  333|Homo sapiens ETFA protein.                  127   3e-29
BT009796-1|AAP88798.1|  333|Homo sapiens electron-transfer-flavo...   127   3e-29
BC095457-1|AAH95457.1|  333|Homo sapiens electron-transfer-flavo...   127   3e-29
BC015526-1|AAH15526.1|  333|Homo sapiens electron-transfer-flavo...   127   3e-29
AF436657-1|AAN03712.1|  333|Homo sapiens electron transfer flavo...   127   3e-29

>J04058-1|AAA52406.1|  333|Homo sapiens ETFA protein.
          Length = 333

 Score =  127 bits (306), Expect = 3e-29
 Identities = 60/102 (58%), Positives = 73/102 (71%)
 Frame = +3

Query: 78  AQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKANGV 257
           A L R QSTLV+AEH N+ L+P T N +TAA ++GGE+S LV GTKC   A  + K  G+
Sbjct: 14  ASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGI 73

Query: 258 AKVLVAESDAFKGFTAESITPLILATQKQFNFTHILAPAHCF 383
           AKVLVA+ D +KG   E +TPLILATQKQFN+THI A A  F
Sbjct: 74  AKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAF 115



 Score = 84.2 bits (199), Expect = 3e-16
 Identities = 38/61 (62%), Positives = 51/61 (83%)
 Frame = +1

Query: 376 TAFGKAILPRVAAKLDVSPITDIIGVKDANTFVRTIYAGNAILTLEAKDPVKVITVRSTA 555
           +AFGK +LPRVAAKL+V+PI+DII +K  +TFVRTIYAGNA+ T++  + VKV +VR T+
Sbjct: 113 SAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTS 172

Query: 556 F 558
           F
Sbjct: 173 F 173


>BT009796-1|AAP88798.1|  333|Homo sapiens
           electron-transfer-flavoprotein, alpha polypeptide
           (glutaric aciduria II) protein.
          Length = 333

 Score =  127 bits (306), Expect = 3e-29
 Identities = 60/102 (58%), Positives = 73/102 (71%)
 Frame = +3

Query: 78  AQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKANGV 257
           A L R QSTLV+AEH N+ L+P T N +TAA ++GGE+S LV GTKC   A  + K  G+
Sbjct: 14  ASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGI 73

Query: 258 AKVLVAESDAFKGFTAESITPLILATQKQFNFTHILAPAHCF 383
           AKVLVA+ D +KG   E +TPLILATQKQFN+THI A A  F
Sbjct: 74  AKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAF 115



 Score = 84.2 bits (199), Expect = 3e-16
 Identities = 38/61 (62%), Positives = 51/61 (83%)
 Frame = +1

Query: 376 TAFGKAILPRVAAKLDVSPITDIIGVKDANTFVRTIYAGNAILTLEAKDPVKVITVRSTA 555
           +AFGK +LPRVAAKL+V+PI+DII +K  +TFVRTIYAGNA+ T++  + VKV +VR T+
Sbjct: 113 SAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTS 172

Query: 556 F 558
           F
Sbjct: 173 F 173


>BC095457-1|AAH95457.1|  333|Homo sapiens
           electron-transfer-flavoprotein, alpha polypeptide
           (glutaric aciduria II) protein.
          Length = 333

 Score =  127 bits (306), Expect = 3e-29
 Identities = 60/102 (58%), Positives = 73/102 (71%)
 Frame = +3

Query: 78  AQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKANGV 257
           A L R QSTLV+AEH N+ L+P T N +TAA ++GGE+S LV GTKC   A  + K  G+
Sbjct: 14  ASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGI 73

Query: 258 AKVLVAESDAFKGFTAESITPLILATQKQFNFTHILAPAHCF 383
           AKVLVA+ D +KG   E +TPLILATQKQFN+THI A A  F
Sbjct: 74  AKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAF 115



 Score = 84.2 bits (199), Expect = 3e-16
 Identities = 38/61 (62%), Positives = 51/61 (83%)
 Frame = +1

Query: 376 TAFGKAILPRVAAKLDVSPITDIIGVKDANTFVRTIYAGNAILTLEAKDPVKVITVRSTA 555
           +AFGK +LPRVAAKL+V+PI+DII +K  +TFVRTIYAGNA+ T++  + VKV +VR T+
Sbjct: 113 SAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTS 172

Query: 556 F 558
           F
Sbjct: 173 F 173


>BC015526-1|AAH15526.1|  333|Homo sapiens
           electron-transfer-flavoprotein, alpha polypeptide
           (glutaric aciduria II) protein.
          Length = 333

 Score =  127 bits (306), Expect = 3e-29
 Identities = 60/102 (58%), Positives = 73/102 (71%)
 Frame = +3

Query: 78  AQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKANGV 257
           A L R QSTLV+AEH N+ L+P T N +TAA ++GGE+S LV GTKC   A  + K  G+
Sbjct: 14  ASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGI 73

Query: 258 AKVLVAESDAFKGFTAESITPLILATQKQFNFTHILAPAHCF 383
           AKVLVA+ D +KG   E +TPLILATQKQFN+THI A A  F
Sbjct: 74  AKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAF 115



 Score = 84.2 bits (199), Expect = 3e-16
 Identities = 38/61 (62%), Positives = 51/61 (83%)
 Frame = +1

Query: 376 TAFGKAILPRVAAKLDVSPITDIIGVKDANTFVRTIYAGNAILTLEAKDPVKVITVRSTA 555
           +AFGK +LPRVAAKL+V+PI+DII +K  +TFVRTIYAGNA+ T++  + VKV +VR T+
Sbjct: 113 SAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTS 172

Query: 556 F 558
           F
Sbjct: 173 F 173


>AF436657-1|AAN03712.1|  333|Homo sapiens electron transfer
           flavoprotein alpha-subunit protein.
          Length = 333

 Score =  127 bits (306), Expect = 3e-29
 Identities = 60/102 (58%), Positives = 73/102 (71%)
 Frame = +3

Query: 78  AQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKANGV 257
           A L R QSTLV+AEH N+ L+P T N +TAA ++GGE+S LV GTKC   A  + K  G+
Sbjct: 14  ASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGI 73

Query: 258 AKVLVAESDAFKGFTAESITPLILATQKQFNFTHILAPAHCF 383
           AKVLVA+ D +KG   E +TPLILATQKQFN+THI A A  F
Sbjct: 74  AKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAF 115



 Score = 84.2 bits (199), Expect = 3e-16
 Identities = 38/61 (62%), Positives = 51/61 (83%)
 Frame = +1

Query: 376 TAFGKAILPRVAAKLDVSPITDIIGVKDANTFVRTIYAGNAILTLEAKDPVKVITVRSTA 555
           +AFGK +LPRVAAKL+V+PI+DII +K  +TFVRTIYAGNA+ T++  + VKV +VR T+
Sbjct: 113 SAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTS 172

Query: 556 F 558
           F
Sbjct: 173 F 173


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,035,532
Number of Sequences: 237096
Number of extensions: 1543727
Number of successful extensions: 2734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2732
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)