Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J17
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81130-12|CAB61027.1| 332|Caenorhabditis elegans Hypothetical p... 107 4e-24
Z79695-8|CAB01967.2| 332|Caenorhabditis elegans Hypothetical pr... 107 4e-24
AC006675-3|AAK84550.1| 335|Caenorhabditis elegans Serpentine re... 32 0.33
Z78410-3|CAB01641.1| 555|Caenorhabditis elegans Hypothetical pr... 29 1.8
U28742-2|AAA68332.2| 925|Caenorhabditis elegans Adaptin, alpha ... 29 3.1
Z81500-9|CAB04098.2| 141|Caenorhabditis elegans Hypothetical pr... 27 9.5
AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear recep... 27 9.5
AF022982-3|AAB69932.1| 670|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z81130-12|CAB61027.1| 332|Caenorhabditis elegans Hypothetical
protein F27D4.1 protein.
Length = 332
Score = 107 bits (258), Expect = 4e-24
Identities = 53/107 (49%), Positives = 71/107 (66%)
Frame = +3
Query: 72 LTAQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKAN 251
L + RL STLV+AEH+ L+P T NA+TAA K+G E+SVLV G A+++AK N
Sbjct: 13 LISNASRLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVN 72
Query: 252 GVAKVLVAESDAFKGFTAESITPLILATQKQFNFTHILAPAHCFWQG 392
GV +VLVA+ + K E + P+ILA+QKQFNFT I A + F +G
Sbjct: 73 GVKRVLVAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRG 119
Score = 76.6 bits (180), Expect = 1e-14
Identities = 32/63 (50%), Positives = 49/63 (77%)
Frame = +1
Query: 376 TAFGKAILPRVAAKLDVSPITDIIGVKDANTFVRTIYAGNAILTLEAKDPVKVITVRSTA 555
+AFG+ ++PRVAAKLDVS I+D+ V A++F RT+YAGNA+ +++ P+K++T R T+
Sbjct: 114 SAFGRGVIPRVAAKLDVSSISDVTEVHSADSFTRTLYAGNAVKKVKSTAPIKLLTFRGTS 173
Query: 556 FPP 564
F P
Sbjct: 174 FEP 176
>Z79695-8|CAB01967.2| 332|Caenorhabditis elegans Hypothetical
protein F27D4.1 protein.
Length = 332
Score = 107 bits (258), Expect = 4e-24
Identities = 53/107 (49%), Positives = 71/107 (66%)
Frame = +3
Query: 72 LTAQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKAN 251
L + RL STLV+AEH+ L+P T NA+TAA K+G E+SVLV G A+++AK N
Sbjct: 13 LISNASRLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVN 72
Query: 252 GVAKVLVAESDAFKGFTAESITPLILATQKQFNFTHILAPAHCFWQG 392
GV +VLVA+ + K E + P+ILA+QKQFNFT I A + F +G
Sbjct: 73 GVKRVLVAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRG 119
Score = 76.6 bits (180), Expect = 1e-14
Identities = 32/63 (50%), Positives = 49/63 (77%)
Frame = +1
Query: 376 TAFGKAILPRVAAKLDVSPITDIIGVKDANTFVRTIYAGNAILTLEAKDPVKVITVRSTA 555
+AFG+ ++PRVAAKLDVS I+D+ V A++F RT+YAGNA+ +++ P+K++T R T+
Sbjct: 114 SAFGRGVIPRVAAKLDVSSISDVTEVHSADSFTRTLYAGNAVKKVKSTAPIKLLTFRGTS 173
Query: 556 FPP 564
F P
Sbjct: 174 FEP 176
>AC006675-3|AAK84550.1| 335|Caenorhabditis elegans Serpentine
receptor, class h protein35 protein.
Length = 335
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 288 FKGFTAESI---TPLILATQKQFNFTHILAPAHCFWQGYFAEG 407
F F+ E++ + LIL T + F ++ +HC WQ YF+EG
Sbjct: 98 FMNFSVENVACTSALILFTSRLFKIFNMYR-SHCSWQRYFSEG 139
>Z78410-3|CAB01641.1| 555|Caenorhabditis elegans Hypothetical
protein C51E3.6 protein.
Length = 555
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +2
Query: 290 QGFYS*EHNTSNIGYTEAI*FYPYLGSRSLLLARLFCRGWLPNLMCHLSLILSVSKMLTP 469
QGF S NT N ++ + Y G +LL L ++P L+ L+ ++K + P
Sbjct: 108 QGFMSLPENTCNATESDYVPEEVYYGKLALLQGCLIASSFVPILIGATGLVGMLTKFIGP 167
Query: 470 L*EQFMQVMLFLLWKQ 517
L +ML L + Q
Sbjct: 168 L--TVSPLMLLLAFSQ 181
>U28742-2|AAA68332.2| 925|Caenorhabditis elegans Adaptin, alpha
chain (clathrinassociated complex) protein 2 protein.
Length = 925
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 151 WVAGDNTSLLCSAKTNVLCKRRSCAVKNRCLLLGENIFQCFFFLETKP 8
++AGD S + K C++ RCLLL I C F E KP
Sbjct: 509 FIAGDERSTAKIQFELLHSKFHLCSITTRCLLLTTYIKFCNLFPEIKP 556
>Z81500-9|CAB04098.2| 141|Caenorhabditis elegans Hypothetical
protein F11D11.6 protein.
Length = 141
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -3
Query: 148 VAGDNTSLLCSAKTNVLCKRRSCAVKNRCLLLGENIFQCFFFLET 14
VA + L + KT CK C VKN C L I +C FF T
Sbjct: 35 VASQGANDLTAFKTVGECKN-GCFVKNDCFLALFVIDKCIFFSYT 78
>AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear receptor
NHR-110 protein.
Length = 412
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 19 LGKKNIEICFHQAVGIYF*LHSCGVYKARWS*QNIIMRYCHQPPK 153
LG ++CF GI+F ++C A + +I + CH P+
Sbjct: 9 LGAIKCQVCFLPGHGIHFGAYTCRACAAFFRIVSISKKKCHFSPR 53
>AF022982-3|AAB69932.1| 670|Caenorhabditis elegans Hypothetical
protein T23B12.6 protein.
Length = 670
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 465 VSIFDTDNISDR*HIKFGSHPRQNSL 388
V ++D + D+ H+K GSHP+Q +
Sbjct: 582 VQVWDLTSALDQFHLKNGSHPQQQQV 607
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,725,107
Number of Sequences: 27780
Number of extensions: 249935
Number of successful extensions: 648
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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