Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J16
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap a...   211   2e-55
AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A recept...   211   2e-55
Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical pr...    83   1e-16
U29380-10|AAO38582.1|  454|Caenorhabditis elegans Hypothetical p...    27   7.2  
U29380-9|AAA68745.1|  472|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL033514-25|CAA22109.1|  570|Caenorhabditis elegans Hypothetical...    27   7.2  

>U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 1 protein.
          Length = 123

 Score =  211 bits (516), Expect = 2e-55
 Identities = 95/116 (81%), Positives = 107/116 (92%)
 Frame = +2

Query: 62  MKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 241
           MK+ YKEE++FEKR+ EG+KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQF
Sbjct: 1   MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60

Query: 242 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 409
           YFLIRKRI LRPEDALFFFVNNVIP T  TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 61  YFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116


>AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A
           receptor-associated protein protein.
          Length = 123

 Score =  211 bits (516), Expect = 2e-55
 Identities = 95/116 (81%), Positives = 107/116 (92%)
 Frame = +2

Query: 62  MKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 241
           MK+ YKEE++FEKR+ EG+KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQF
Sbjct: 1   MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60

Query: 242 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 409
           YFLIRKRI LRPEDALFFFVNNVIP T  TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 61  YFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116


>Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical
           protein ZK593.6 protein.
          Length = 130

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 39/114 (34%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
 Frame = +2

Query: 74  YKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFL 250
           +KE   F +R+ + E+IR + P++VPVI+E+    R L  +D+ K+LVP  +TV +   +
Sbjct: 17  FKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSI 76

Query: 251 IRKRIHLRPEDALFFFVN-NVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 409
           +R+R+ L P+ A F  VN   +   S +M +LY +  D D F+Y+ ++ +  +G
Sbjct: 77  VRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130


>U29380-10|AAO38582.1|  454|Caenorhabditis elegans Hypothetical
           protein ZK546.14b protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +2

Query: 50  KKTKMKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKK 205
           KK KMK + K++    + KTEGEK + K   R     +K  + R+ D+ K+K
Sbjct: 398 KKNKMKDRRKQKWENRENKTEGEK-QTKQDKR-----KKNLQKRIDDVKKRK 443


>U29380-9|AAA68745.1|  472|Caenorhabditis elegans Hypothetical
           protein ZK546.14a protein.
          Length = 472

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +2

Query: 50  KKTKMKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKK 205
           KK KMK + K++    + KTEGEK + K   R     +K  + R+ D+ K+K
Sbjct: 416 KKNKMKDRRKQKWENRENKTEGEK-QTKQDKR-----KKNLQKRIDDVKKRK 461


>AL033514-25|CAA22109.1|  570|Caenorhabditis elegans Hypothetical
           protein Y75B8A.25 protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
 Frame = +1

Query: 118 ENSQEISGSCSSNCRESPEG*TWRPRQEEVFSTIRLNCWSILLPD*KTYSPSSRGR---- 285
           E+ ++   S SS  R  P     RPRQ  +F     +  SI+LP      P+S  +    
Sbjct: 107 EDFEKEFASPSSTARMVPFTARVRPRQNPIFGENMASLKSIVLPPPAPTKPASTPKDAHE 166

Query: 286 AFLFREQCDSTNICNYGFSLPGASRRG 366
              + +  DS N+ +Y  S P  +  G
Sbjct: 167 TVFYPQTHDSFNLDHYNGSRPSFAFAG 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,815,032
Number of Sequences: 27780
Number of extensions: 250914
Number of successful extensions: 747
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)