Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J15
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.36
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 29 0.63
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 1.5
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 2.5
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 26 3.4
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 3.4
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 4.4
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 5.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 7.7
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 25 7.7
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 25 7.7
>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 29.5 bits (63), Expect = 0.36
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 390 FITVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVV 283
F+ S IS ++N R Y+ I YCF Y++
Sbjct: 4 FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 28.7 bits (61), Expect = 0.63
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 129 ELIISILEYSLWVDVTGQCQGREGKYGYYNLHV 31
+L + L+ ++WV VT + G YGY LH+
Sbjct: 212 DLYSNNLKDAVWVAVTNYMKNLVGNYGYTELHI 244
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 1.5
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Frame = +1
Query: 112 NGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAI------- 270
N N Q A + + KN S++ S + L IAS +H+ + I
Sbjct: 59 NANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEW 118
Query: 271 -DFPNDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL 393
+ + ++ D+ +K+R + VDL+ K NEL
Sbjct: 119 AEIMKKDPNMSLMQDICEKIRKLDIVDLRAPKKPEKEAMNEL 160
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 2.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 3 TREKHESHRQHEDYNNHI 56
+ +H SHR+HE Y H+
Sbjct: 145 SNHRHGSHRRHEPYRTHL 162
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 441 HFRIKHISGHNSKLII*FI 385
HF + H+ GH SKL F+
Sbjct: 72 HFHVSHVPGHASKLYFAFL 90
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 26.2 bits (55), Expect = 3.4
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -3
Query: 476 AASSFLPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPLIDLT 324
A +FL F FC + +N SLD + +YTL+ L P + +T
Sbjct: 289 ARLNFL-SFSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLIT 338
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 280 NDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNL 450
ND + +A +DL QK+ L N ++ ++ D+F+ R + + NL
Sbjct: 546 NDYIAQAGLSDLLQKIADTTDDKQALKNYLHSWKWDQQIDKFSTFIRKTLSETIDNL 602
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 5.9
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +1
Query: 379 NGNELNDQFAVVSRDVFNSEVQNLNFGKNE----EAANIINTWVEDHTNKR 519
NG ++ D VV VF + QN KNE EA+ T V D T +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASESAPTNVSDSTEPK 329
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 556 YCPTN*DPPNV*YVYWCGLQPK 491
YC +N ++ Y+ WCG Q K
Sbjct: 245 YCQSNQTETSLHYLCWCGKQEK 266
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 138 TCGELIISILEYSLWVDVTGQCQGREGKYGY 46
TCG L+I I LWV++T + +G G+
Sbjct: 22 TCGLLLIGIACNVLWVNMTARNILPKGNLGF 52
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 458 VKMKKQLTLLILGLKTTPINVS 523
+ + +QLT+L+ G+ +TPI V+
Sbjct: 77 ISIYQQLTILLFGVLSTPITVN 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.129 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,774
Number of Sequences: 5004
Number of extensions: 41559
Number of successful extensions: 100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -