Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J15
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1152 + 9170628-9171899 46 2e-05
01_06_0824 - 32243495-32244319,32244449-32244859 43 2e-04
03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310... 37 0.010
11_02_0011 - 7337618-7338496,7338596-7338991 36 0.023
11_02_0012 - 7346282-7347136,7347234-7347593 30 1.1
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 28 4.5
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 28 6.0
04_03_0260 - 13580396-13582990 27 7.9
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 27 7.9
>01_01_1152 + 9170628-9171899
Length = 423
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 2/132 (1%)
Frame = +1
Query: 172 KSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPN-DNVTKAVFTDLNQKVRSIKGVD 348
++ I+S S LA +A + GE+ ELL + P+ + ++ T L ++R +
Sbjct: 59 RNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNTS 118
Query: 349 LKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFGKN-EEAANIINTWVEDHTNKRIK 525
A V++ G L +FA + + + + +F E+A +N +V D T I+
Sbjct: 119 F--ACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLIR 176
Query: 526 HLVDPSSLDSST 561
++ P+S+DSST
Sbjct: 177 DVLPPNSVDSST 188
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 42.7 bits (96), Expect = 2e-04
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Frame = +1
Query: 169 DKSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPN--------DNVTKAVFTDLNQK 324
DK++ +S S+ LA L + GE+ D+++ + +V D +
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 325 VRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNF-GKNEEAANIINTWVE 501
G ++ AN V++ L +A V D + +E + ++F K EEA IN W E
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 502 DHTNKRIKHLVDPSSLDSST 561
T RIK + ++D +T
Sbjct: 151 SATAGRIKDFLPKDAVDRAT 170
>03_02_0834 -
11630288-11630500,11630531-11630623,11630844-11631050,
11631301-11633089,11633817-11634145
Length = 876
Score = 37.1 bits (82), Expect = 0.010
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +1
Query: 241 ESHDELLKAIDFPNDNVTKAVFTDLNQKVRSI--KGVDLKLANKVYIANGNELNDQFAVV 414
+ HD LLK+ NDN+TK + NQ + + KG D K +KV N+Q +
Sbjct: 467 KEHDTLLKSSVELNDNLTKTA-EERNQILECLKEKGGDNKALHKVIARLQRISNEQEKTI 525
Query: 415 S--RDVFNSEVQNLNFGKNEEAANI 483
+ R FN+E++N + G +E + +
Sbjct: 526 TGLRQGFNAELENKSLGTSESISRM 550
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 35.9 bits (79), Expect = 0.023
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Frame = +1
Query: 169 DKSVILSAFSVMIPLAQLAIASTGESHDELLK-----AIDFPNDNVTKAVFTDLNQKVRS 333
+K+++ S S+ LA +A + G + DELL ++D ++V +AV L + S
Sbjct: 30 NKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADESAS 89
Query: 334 IKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFGKN-EEAANIINTWVEDHT 510
G + A V+ EL + + + + + NF + + + IN WV T
Sbjct: 90 -GGPRVSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKAT 148
Query: 511 NKRIKHLVDPSSLDSST 561
NK I ++ S+ T
Sbjct: 149 NKLIPEILPDGSVHVDT 165
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 30.3 bits (65), Expect = 1.1
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Frame = +1
Query: 163 NPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPNDNVTKAVFTDLNQKVRSIKG 342
N +++V+ S S+ LA +A + G + DEL+ + A DL + VR +
Sbjct: 28 NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLG-------AASLDDLEESVR--RA 78
Query: 343 VDLKLANKVYIANGNELNDQFAVV--SRDVFNSEVQNLNFGKNEEAANI-INTWVEDHTN 513
V++ LA++ + G ++ V R + +F + +++ IN WV TN
Sbjct: 79 VEVGLADESE-SGGPRVSYACGVWHDERLALKPAYRAADFQRQPKSSRKKINKWVSKATN 137
Query: 514 KRIKHLVDPSSLDSST 561
K I+ ++ S+ T
Sbjct: 138 KLIREILPDGSVHGGT 153
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 451 NFGKNEEAANIINTWVEDHTNKRIKHLVDPSSLDSST 561
N K + + + TWV+ ++ + L+D ++LDSST
Sbjct: 490 NKRKRDATSELSETWVQCDACRKWRRLLDGTALDSST 526
>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 488 LIMLAASSF--LPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLA 357
L++L SF LP C S L SL+ T+N S SLP M L A
Sbjct: 1121 LVILGCPSFSSLPASIRCLSNLK-SLELTSNNSLTSLPEGMQNLTA 1165
>04_03_0260 - 13580396-13582990
Length = 864
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 403 FAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKRIKHLVDPSSLD 552
F VV ++ + +N++ + EEA +IN E N ++ ++D S D
Sbjct: 737 FGVVLMEIISGR-KNIDISQPEEAVQLINLLREKAQNNQLIDMIDKHSSD 785
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 400 QFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKRIKHLVDPSSLD 552
+F VV ++ + +N++ + EEA +IN E N ++ ++D S D
Sbjct: 531 KFGVVLMEIISGR-KNIDISQPEEAVQLINLLREKAQNSQLIDMIDKHSND 580
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.129 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,266,041
Number of Sequences: 37544
Number of extensions: 234315
Number of successful extensions: 469
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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