Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J11
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 29 0.34
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 27 1.8
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 2.4
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 26 3.2
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 3.2
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 5.6
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 25 7.3
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc... 25 7.3
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 9.7
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 29.5 bits (63), Expect = 0.34
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -2
Query: 266 PLPVTEFSGAPEPSCVTKLYVAGATDIFAILLKKMNLSSLYSTR---LQYVRICSSLSNI 96
P+P S P+ + + A ATDI ++ NL S+Y++ Y ++C S I
Sbjct: 339 PIPWNGGSNTYSPTALAAIRAACATDINFDVVNASNLDSMYTSGKIVAMYAQVCLVASRI 398
Query: 95 L 93
L
Sbjct: 399 L 399
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 67 WYLYKHFYKSILLRLEQIRTYCNLVEYKELKFIFFSNIANISVAPAT 207
WYL+ F KSI ++ V Y E ++ NISV+P T
Sbjct: 556 WYLFYRFVKSIKKQV---------VNYTESSLAMLGDLLNISVSPVT 593
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 13 ISAKLFLLLTHWCLFVSRWYLYKHFYKSILLRLEQIRTYC 132
+SA++FL L ++R +Y +++ L L+++ YC
Sbjct: 301 VSAQIFLWCLFGVLMIARGLIYLALFRNFLNILKRMAIYC 340
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 354 TWTNAFCAAFFWSVAL*PCCFFILD 280
TW NAF F + L C F ILD
Sbjct: 442 TWRNAFFDEFIGTAVLVGCLFAILD 466
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +1
Query: 10 KISAKLFLLLTHWCLFVSRWYLYKHFYKSILLRLEQIRTYCNLV--EYKELKFIFFSNIA 183
K+S LLL H L V K F + L +I +C+LV Y++ ++S
Sbjct: 643 KLSPWNMLLLLHGLLSVDISLKQKKFVPGMKLSKREIDGWCSLVFEAYQKWNRCYYSIFL 702
Query: 184 NISVAPATYNLVTQ 225
N ++ P + V +
Sbjct: 703 NNNILPFGHPFVKE 716
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 302 PVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYVAGAT 192
PV SSS T S P P T S P P+ + A +T
Sbjct: 840 PVQSSSTTSSITPTPTTTSSITPTPTTTSTTTTAQST 876
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 82 HFYKSILLRLEQIRTYCNLVEYKELKFIFFSNIANISV 195
HF S LL + + + L+ F++FSN NIS+
Sbjct: 795 HFLTSSLLNEQGLTAFEVLMTVWCDNFVYFSNFKNISI 832
>SPBC1703.08c |||5-formyltetrahydrofolate
cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 204
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 500 KNCKNICLFLLKKKKK 547
K CKN+CL++ KK+
Sbjct: 42 KRCKNVCLYMNMPKKE 57
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 24.6 bits (51), Expect = 9.7
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -2
Query: 308 CDPVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYVAGATDIFAILLKKMNLSSLYSTRLQ 129
CDPV+ S+ T + + EFS S + + V G I + +LK L S + +
Sbjct: 818 CDPVLLSNMTINSETFDDFEFSVEQFNSLINQFVVTG-KPIPSDILKIDTLKSFEALITE 876
Query: 128 YVRICSS-LSNILL*KC 81
C+ + N LL C
Sbjct: 877 CPICCNEPIQNPLLLNC 893
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,862
Number of Sequences: 5004
Number of extensions: 37827
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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