Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J11
(549 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68213-4|CAA92441.1| 73|Caenorhabditis elegans Hypothetical pr... 79 2e-15
AF202929-1|AAK69379.1| 73|Caenorhabditis elegans Nx protein. 79 2e-15
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 33 0.14
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 33 0.14
U49941-10|AAB53870.1| 73|Caenorhabditis elegans Hypothetical p... 33 0.18
U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical pr... 31 0.41
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 31 0.72
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 31 0.72
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 29 2.2
AF300704-1|AAG24400.1| 622|Caenorhabditis elegans incenp-like p... 29 2.2
AC025716-5|AAK39616.1| 622|Caenorhabditis elegans Incenp homolo... 29 2.2
Z92786-1|CAB07203.1| 250|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z78198-12|CAJ85750.1| 205|Caenorhabditis elegans Hypothetical p... 27 6.7
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 27 6.7
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 27 6.7
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 27 6.7
Z81589-3|CAB04719.1| 256|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z73974-8|CAA98274.2| 526|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z73905-7|CAA98112.2| 526|Caenorhabditis elegans Hypothetical pr... 27 8.9
U53155-9|AAC48273.1| 328|Caenorhabditis elegans Seven tm recept... 27 8.9
AF003739-7|AAB58068.1| 339|Caenorhabditis elegans Hypothetical ... 27 8.9
>Z68213-4|CAA92441.1| 73|Caenorhabditis elegans Hypothetical
protein C01F6.9 protein.
Length = 73
Score = 79.0 bits (186), Expect = 2e-15
Identities = 40/74 (54%), Positives = 43/74 (58%)
Frame = +2
Query: 227 MARGHQKIXXXXXXXXXXXXXXXXXGHSATDQKKAAQKALVHVCAVCKAQMPDPKTYKQH 406
MARG QKI + DQK AA KAL H C VC A MPDPKTYKQH
Sbjct: 1 MARGQQKIQSQQKNQKKADAARK----AGIDQKAAAAKALNHKCTVCLAMMPDPKTYKQH 56
Query: 407 FENKHPKNDLPEDL 448
FENKHPK+ LP +L
Sbjct: 57 FENKHPKSPLPAEL 70
>AF202929-1|AAK69379.1| 73|Caenorhabditis elegans Nx protein.
Length = 73
Score = 79.0 bits (186), Expect = 2e-15
Identities = 40/74 (54%), Positives = 43/74 (58%)
Frame = +2
Query: 227 MARGHQKIXXXXXXXXXXXXXXXXXGHSATDQKKAAQKALVHVCAVCKAQMPDPKTYKQH 406
MARG QKI + DQK AA KAL H C VC A MPDPKTYKQH
Sbjct: 1 MARGQQKIQSQQKNQKKADAARK----AGIDQKAAAAKALNHKCTVCLAMMPDPKTYKQH 56
Query: 407 FENKHPKNDLPEDL 448
FENKHPK+ LP +L
Sbjct: 57 FENKHPKSPLPAEL 70
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 33.1 bits (72), Expect = 0.14
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 350 HVCAVCKAQMPDPKTYKQHFENKH 421
H+C +C ++P+ +T ++H +NKH
Sbjct: 39 HMCLLCNRRIPENETLREHMKNKH 62
Score = 32.7 bits (71), Expect = 0.18
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 350 HVCAVCKAQMPDPKTYKQHFENKH 421
HVC +C QMP T ++H E +H
Sbjct: 336 HVCVLCNHQMPKTVTVQEHMEKEH 359
Score = 29.9 bits (64), Expect = 1.3
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 350 HVCAVCKAQMPDPKTYKQHFENKH 421
H C +C Q+P+ +T + H +++H
Sbjct: 206 HTCLLCNRQIPENETVRDHMKSQH 229
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 33.1 bits (72), Expect = 0.14
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 350 HVCAVCKAQMPDPKTYKQHFENKH 421
H+C +C ++P+ +T ++H +NKH
Sbjct: 39 HMCLLCNRRIPENETLREHMKNKH 62
Score = 32.7 bits (71), Expect = 0.18
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 350 HVCAVCKAQMPDPKTYKQHFENKH 421
HVC +C QMP T ++H E +H
Sbjct: 336 HVCVLCNHQMPKTVTVQEHMEKEH 359
Score = 29.9 bits (64), Expect = 1.3
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 350 HVCAVCKAQMPDPKTYKQHFENKH 421
H C +C Q+P+ +T + H +++H
Sbjct: 206 HTCLLCNRQIPENETVRDHMKSQH 229
>U49941-10|AAB53870.1| 73|Caenorhabditis elegans Hypothetical
protein K10B3.1a protein.
Length = 73
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = +2
Query: 227 MARGHQKIXXXXXXXXXXXXXXXXXGHSATDQKKAAQKALVHVCAVC 367
MARGHQK G +DQK AA +L H C VC
Sbjct: 1 MARGHQKALSQQRNAEKTAKAKKAVG---SDQKNAAMASLHHKCTVC 44
>U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical
protein C09F5.3 protein.
Length = 359
Score = 31.5 bits (68), Expect = 0.41
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 350 HVCAVCKAQMPDPKTYKQHFENKHPK 427
H+C++C + P P+ HF H K
Sbjct: 183 HICSICDSAFPSPQAQSVHFAEAHKK 208
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 30.7 bits (66), Expect = 0.72
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -2
Query: 332 QPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPS 225
+PS+G DP+ +S TF Q P TEF GAP S
Sbjct: 50 EPSAGF-GIDPITTSK-TFGSQTTPKTEFGGAPSLS 83
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 30.7 bits (66), Expect = 0.72
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -2
Query: 332 QPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPS 225
+PS+G DP+ +S TF Q P TEF GAP S
Sbjct: 50 EPSAGF-GIDPITTSK-TFGSQTTPKTEFGGAPSLS 83
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical
protein M04B2.1 protein.
Length = 870
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 311 ATDQKKAAQKALVHVCAVCKAQMPDPKTYKQHFENKHPKND 433
A Q K +++ C VC + +T + H + HPK D
Sbjct: 813 ADHQVKLCSAEIMYSCDVCAFKCSSYQTLEAHLTSNHPKGD 853
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 311 ATDQKKAAQKALVHVCAVCKAQMPDPKTYKQHFENKHPKND 433
A Q K +++ C VC + +T + H + HPK D
Sbjct: 813 ADHQVKLCSAEIMYSCDVCAFKCSSYQTLEAHLTSNHPKGD 853
>AF300704-1|AAG24400.1| 622|Caenorhabditis elegans incenp-like
protein ICP-1 protein.
Length = 622
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 320 QKKAAQKALVHVCAVCKAQMPDPKTYKQHFENKHPKNDLPED 445
+K+A Q+AL +M P+TY+ + +N + NDL D
Sbjct: 493 EKQARQEALRKTPPPAAYEMTPPRTYQNNSKNDYGLNDLNSD 534
>AC025716-5|AAK39616.1| 622|Caenorhabditis elegans Incenp homolog
protein 1 protein.
Length = 622
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 320 QKKAAQKALVHVCAVCKAQMPDPKTYKQHFENKHPKNDLPED 445
+K+A Q+AL +M P+TY+ + +N + NDL D
Sbjct: 493 EKQARQEALRKTPPPAAYEMTPPRTYQNNSKNDYGLNDLNSD 534
>Z92786-1|CAB07203.1| 250|Caenorhabditis elegans Hypothetical
protein F47H4.1 protein.
Length = 250
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 305 HSAT-DQKKAAQKALVHVCAVCKAQMPDPKTYKQHFENKH 421
HSA+ ++ + + H C +C+ + +T ++H N+H
Sbjct: 36 HSASLNRHRQLMHSNEHTCMMCERALNQKETIREHMRNEH 75
>Z78198-12|CAJ85750.1| 205|Caenorhabditis elegans Hypothetical
protein F55C5.11 protein.
Length = 205
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 347 VHVCAV--CKAQMPDPKTYKQHFENKHPKNDLPEDL 448
+H C V C Q ++ +H N +PK +PE L
Sbjct: 134 MHTCTVTGCGKQFSSRRSRNRHSSNNNPKLHMPESL 169
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 27.5 bits (58), Expect = 6.7
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -2
Query: 341 LFVQPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYV---AGATDIFAILL 171
L V+ S + H VSS T S+ P P + +G +P T+ +TDIF+
Sbjct: 135 LKVEEMSDEKHAQSPVSSDMTTSKSPTPSKKENGLMKPPQSTEKAQRKRKESTDIFSSEK 194
Query: 170 KKMNLSSLYST 138
+K++L ++ S+
Sbjct: 195 RKLSLETVASS 205
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 27.5 bits (58), Expect = 6.7
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -2
Query: 341 LFVQPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYV---AGATDIFAILL 171
L V+ S + H VSS T S+ P P + +G +P T+ +TDIF+
Sbjct: 135 LKVEEMSDEKHAQSPVSSDMTTSKSPTPSKKENGLMKPPQSTEKAQRKRKESTDIFSSEK 194
Query: 170 KKMNLSSLYST 138
+K++L ++ S+
Sbjct: 195 RKLSLETVASS 205
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 27.5 bits (58), Expect = 6.7
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -2
Query: 341 LFVQPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYV---AGATDIFAILL 171
L V+ S + H VSS T S+ P P + +G +P T+ +TDIF+
Sbjct: 135 LKVEEMSDEKHAQSPVSSDMTTSKSPTPSKKENGLMKPPQSTEKAQRKRKESTDIFSSEK 194
Query: 170 KKMNLSSLYST 138
+K++L ++ S+
Sbjct: 195 RKLSLETVASS 205
>Z81589-3|CAB04719.1| 256|Caenorhabditis elegans Hypothetical
protein T08G5.7 protein.
Length = 256
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 356 CAVCKAQMPDPKTYKQHFENKHPKNDL 436
C VC+ +P K K H KH K +
Sbjct: 79 CPVCELVIPTEKGLKNHMNQKHRKKPI 105
>Z73974-8|CAA98274.2| 526|Caenorhabditis elegans Hypothetical
protein F29F11.2 protein.
Length = 526
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 25 LFLLLTHWCLFVS-RWYLYKHFYKSILLRLEQI 120
LFL T + +FVS YL++ F+KS+ +R E+I
Sbjct: 494 LFLTAT-FAIFVSISLYLFRVFFKSVFVRKEKI 525
>Z73905-7|CAA98112.2| 526|Caenorhabditis elegans Hypothetical
protein F29F11.2 protein.
Length = 526
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 25 LFLLLTHWCLFVS-RWYLYKHFYKSILLRLEQI 120
LFL T + +FVS YL++ F+KS+ +R E+I
Sbjct: 494 LFLTAT-FAIFVSISLYLFRVFFKSVFVRKEKI 525
>U53155-9|AAC48273.1| 328|Caenorhabditis elegans Seven tm
receptor protein 138 protein.
Length = 328
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +3
Query: 24 TLFTLNSLVFVCVQMVSI 77
T+FT+NS++F V+M+S+
Sbjct: 42 TIFTINSIIFTWVEMMSL 59
>AF003739-7|AAB58068.1| 339|Caenorhabditis elegans Hypothetical
protein M01D7.1 protein.
Length = 339
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 485 IYLIHKNCKNICLFLLKKKKK 547
IY ++ CKN C+F+L K K
Sbjct: 39 IYSVYVQCKNSCVFILIKLSK 59
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,853,618
Number of Sequences: 27780
Number of extensions: 219709
Number of successful extensions: 664
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -