Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J11
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    25   0.67 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   6.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   6.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.2  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 356 CAVCKAQMPDPKTYKQHFENKHPKND 433
           C  C+       + K+HF++KH ++D
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSD 33


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/54 (22%), Positives = 20/54 (37%)
 Frame = +1

Query: 58  VSRWYLYKHFYKSILLRLEQIRTYCNLVEYKELKFIFFSNIANISVAPATYNLV 219
           +  W  +      ILLR   +  +   V    +  I   NI +I      Y+L+
Sbjct: 48  IPTWLSFIRIVLVILLRAGYVLIHIGSVPVNNINLILLQNIIDICWITMVYSLL 101


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 76  YKHFYKSILLRLEQI 120
           YK  YK+ ++ +EQI
Sbjct: 113 YKKLYKNYIINIEQI 127


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 76  YKHFYKSILLRLEQI 120
           YK  YK+ ++ +EQI
Sbjct: 113 YKKLYKNYIINIEQI 127


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 138 EIAICANLLESK*YTFIKMFV*IPSGHKQTPM 43
           +IA+C N+L S+   F+ +   IPS     P+
Sbjct: 266 KIALCINILLSQTMFFLLISEIIPSTSLALPL 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,726
Number of Sequences: 438
Number of extensions: 2486
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)