Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J10
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 198 4e-52
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 198 4e-52
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 35 0.008
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 2.2
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 26 3.9
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 5.1
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 6.8
SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.0
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 25 9.0
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 9.0
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 9.0
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 9.0
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 198 bits (483), Expect = 4e-52
Identities = 90/138 (65%), Positives = 110/138 (79%)
Frame = +1
Query: 22 QTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKCPFTGN 201
Q+ER+FQKQP +F N KKG G R++KDVGLGFKTP EA+ G Y+DKKCPF G
Sbjct: 8 QSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQ 60
Query: 202 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 381
VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR + GD+
Sbjct: 61 VSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDV 119
Query: 382 VTIGECRPLSKTARFNVL 435
VT+G+CRPLSKT RFNVL
Sbjct: 120 VTVGQCRPLSKTVRFNVL 137
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 198 bits (483), Expect = 4e-52
Identities = 90/138 (65%), Positives = 110/138 (79%)
Frame = +1
Query: 22 QTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKCPFTGN 201
Q+ER+FQKQP +F N KKG G R++KDVGLGFKTP EA+ G Y+DKKCPF G
Sbjct: 8 QSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQ 60
Query: 202 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 381
VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR + GD+
Sbjct: 61 VSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDV 119
Query: 382 VTIGECRPLSKTARFNVL 435
VT+G+CRPLSKT RFNVL
Sbjct: 120 VTVGQCRPLSKTVRFNVL 137
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 34.7 bits (76), Expect = 0.008
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +1
Query: 229 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 408
G+V M +T +R + P ++ +++N V + +GD VTI CRP
Sbjct: 7 GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63
Query: 409 SKTARFNVL 435
S T RF ++
Sbjct: 64 SATKRFEII 72
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 381 DVSDFHVPEARR*MNRHVPVSL 316
DV+ + VPEARR RH PV L
Sbjct: 481 DVNYYPVPEARRSNMRHRPVGL 502
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 168 CAFNGLARRFEA*AHIFVVPKRLTAALHADAFLAIQEDSW-LLLE*TFCLIRHI 10
C+F+GL EA A + PK ++ D ++QE + +L+E T + HI
Sbjct: 210 CSFSGLLSGVEAAATELLDPKNPSSVTKQDLCYSLQETGFAMLVEITERAMAHI 263
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 364 VEIGDIVTIGECRPLSKTARFNVL 435
V +GDIVTI C + R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Frame = -2
Query: 224 RIRPRMDTLPVNGHFLSMYVPSTASRGVLK--------PRPTSLWYLRGLRLRFTPMPFL 69
+I+P ++++ + +L+ Y PS R ++ P+ SL +LR ++ P L
Sbjct: 364 QIKPDLESMLIISEYLNEYKPSPKMRELINWLYSNFHLPKTVSLHFLREVQSLVFRYPLL 423
Query: 68 RFK--------KTVGCFWN 36
K K GC WN
Sbjct: 424 HSKIHLAISTLKDSGCDWN 442
>SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 458 EPLPLETFSTLNLAVLESGLHSPI 387
+P P+ F N+ L G+HSP+
Sbjct: 15 KPSPVLPFDVSNIGDLSQGVHSPL 38
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 366 HVPEARR*MNRHVPVSLLKSVVFRQVMEII 277
H PE NR ++++K+V+F+Q+ E++
Sbjct: 49 HPPEEIARRNRVPQMAVVKAVLFQQLCEVV 78
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 79 IGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDK 180
+G S+ L ++ GLG K E G YID+
Sbjct: 103 VGFDVSKPSLPVFENSGLGSKYSTEIANGVYIDE 136
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Frame = -1
Query: 336 RHVPVSLLKSVVFRQVMEIIAPDNNCSLHF-------HFLNNACQDTASDG 205
+HV + L FR I DN +LHF H ++ QDT SDG
Sbjct: 699 KHVDFTYLDDEKFRAT---IHDDNTFTLHFFNRHSPFHLISQFLQDTFSDG 746
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 428 LNLAVLESGLHSPIVTMSPISTSLKQGDR*TDMFLCRFSN 309
L+ + + L SP+ T++ + L G D+FL FSN
Sbjct: 6 LHESAIPKELDSPVTTIALYNNHLYFGTEGGDVFLYNFSN 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,429
Number of Sequences: 5004
Number of extensions: 42456
Number of successful extensions: 126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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