Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J09
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 29 0.60
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 29 0.60
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.0
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 1.8
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 3.2
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 26 3.2
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 25 5.6
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 25 5.6
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 5.6
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 5.6
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 25 5.6
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 25 7.3
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 25 9.7
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.7
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 188 REPRSDLTVIPRPRATVIRVPNLRDPRTEPVNRVSN 295
R+P + +PR AT ++ PNL+ P N N
Sbjct: 19 RDPFQSRSQLPRFLATSVKKPNLKKPSVNSANETKN 54
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.7 bits (61), Expect = 0.60
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 172 SASPSTRTALRPDRDSASPSHSDPRSEPTRSANR 273
S+ + R++ ++DS S +HS RS T ANR
Sbjct: 101 SSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANR 134
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 1.0
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +1
Query: 82 SPQEVIKQQCTAFKDPRLEP**SALRPDRESASPSTRTALRPDRDSASPSHSDPRSEPTR 261
+PQ ++ +A P + P A P S +P ++L P A+P S P +
Sbjct: 132 TPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
Query: 262 SANRTSEPRI 291
SA P++
Sbjct: 192 SAVPPMPPKV 201
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 43 NSETEAVVKHSASSPQEVIKQQ 108
NS +A++KH S PQ+V+ Q
Sbjct: 1040 NSPFQALIKHFCSEPQKVVNSQ 1061
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 353 CASLRARYVSNYAEFETHYSSI-RGSLVRFADRVGSERGS 237
CA LR ++V+ FET Y S+ R SL FA + S
Sbjct: 731 CALLRDKFVNMPELFETTYQSLSRKSLPSFASTAADKEKS 770
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 169 ESASPSTRTALRPDRDSASPSHSDPRSEPTR 261
ESASPS AL +S HS P E +
Sbjct: 188 ESASPSALQALDSTAAGSSKEHSSPHDETVK 218
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 356 PCASLRARYVSNYAEFETHYSSIR 285
P ++ RY SN + T YSSIR
Sbjct: 126 PVTVIKVRYESNLYSYTTIYSSIR 149
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 215 SRSGRSAVLVL-GDADSRSGRSADHYGSRRGSLNAVHCCL 99
S AVL L G + S SA YGSR + NA C L
Sbjct: 280 SLDNNPAVLDLNGPPNQESSSSASSYGSRTQTPNARSCSL 319
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 170 NPRPRVREPRSDLTVIPR 223
N RPRV P S TV+P+
Sbjct: 54 NTRPRVSAPSSSSTVVPK 71
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 151 ALRPDRESASPSTRTALRPDRDSASPSHSDPRSEPTRSANRTS 279
+L ++ A S+ TA S S+ DP EPT SA+ +
Sbjct: 194 SLESSQQKAPSSSSTATPASAASEIISNKDPVVEPTHSASNAA 236
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 224 PRATVIRVPNLRDPRTEPVNRVSNYSGSRIPRNS 325
PR ++PN P T+P+ S +S R+ +S
Sbjct: 245 PRKPFSKIPNRLSPSTQPLLSNSRHSSFRLASSS 278
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +1
Query: 445 VFLYCL----TVNRILLYVVLILCMLYILFNICVYC 540
+FL+CL + R L+Y+ L L IL + +YC
Sbjct: 305 IFLWCLFGVLMIARGLIYLALFRNFLNILKRMAIYC 340
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 487 VVLILCMLYILFNICVYCFYI 549
V+ I C ++LF IC +C ++
Sbjct: 6 VLTIRCTFHVLFAICYFCDHL 26
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 172 SASPSTRTALRPDRDSASPSHSDPRSEPTRSANRTSEPRIEL*WVSNSA*FETYRARKLA 351
S SP++ + P + PSH++P + S R P + + N + Y + KLA
Sbjct: 51 SGSPNSSSNSTPANQGSLPSHTNP--QLYSSITRKERPELFRSYSGNPRLSKPYASSKLA 108
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 211 RDSASPSHSDPRSEPTRSANRTSEP 285
RDS P++S P+S P+ S +T EP
Sbjct: 177 RDSTIPANSHPQSLPSNSIPKT-EP 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,812,247
Number of Sequences: 5004
Number of extensions: 31827
Number of successful extensions: 135
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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