Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J09
(549 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 32 0.31
U23515-14|AAN65299.1| 285|Caenorhabditis elegans Hypothetical p... 30 0.95
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 30 0.95
AF003138-1|AAK21371.3| 469|Caenorhabditis elegans Hypothetical ... 30 1.3
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 29 2.9
U41543-11|AAP40530.1| 362|Caenorhabditis elegans Hypothetical p... 28 3.9
U41543-10|AAP40531.1| 374|Caenorhabditis elegans Hypothetical p... 28 3.9
U41543-9|AAB37021.2| 453|Caenorhabditis elegans Hypothetical pr... 28 3.9
AL117204-25|CAB55139.2| 528|Caenorhabditis elegans Hypothetical... 28 3.9
AL117204-15|CAB55129.1| 521|Caenorhabditis elegans Hypothetical... 28 3.9
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 28 3.9
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 28 5.1
U00043-2|AAC77512.1| 242|Caenorhabditis elegans Set (trithorax/... 28 5.1
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 27 6.7
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 6.7
U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical p... 27 6.7
U56963-5|AAB38122.3| 323|Caenorhabditis elegans Serpentine rece... 27 6.7
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chlor... 27 6.7
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chlor... 27 6.7
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo... 27 6.7
AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride ... 27 6.7
U88167-7|AAB42229.1| 378|Caenorhabditis elegans Hypothetical pr... 27 8.9
L23648-3|AAN63386.1| 438|Caenorhabditis elegans Cyclin t protei... 27 8.9
L23648-2|AAN63387.1| 183|Caenorhabditis elegans Cyclin t protei... 27 8.9
L23648-1|AAA28034.1| 468|Caenorhabditis elegans Cyclin t protei... 27 8.9
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 27 8.9
AC024882-17|AAF60937.1| 321|Caenorhabditis elegans Serpentine r... 27 8.9
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 31.9 bits (69), Expect = 0.31
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 170 NPRPRVREPRSDLTVIPRPRATVIRVPNLRDPRTEPVNRVSNYSGSRIP 316
+PR R R PR + PR + R P RD R P R ++ S SR P
Sbjct: 118 SPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSP 166
>U23515-14|AAN65299.1| 285|Caenorhabditis elegans Hypothetical
protein R144.2b protein.
Length = 285
Score = 30.3 bits (65), Expect = 0.95
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 154 LRPDRESASPSTRTALRPDRDSASPSHSDPRSEPTRSANRTSEPRI 291
L P+ ++P T ALR D +PS S P T A TS R+
Sbjct: 134 LDPNWPISNPQTGRALRDDPQVMAPSQSRPAGNATSPAASTSTNRV 179
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 30.3 bits (65), Expect = 0.95
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 154 LRPDRESASPSTRTALRPDRDSASPSHSDPRSEPTRSANRTSEPRI 291
L P+ ++P T ALR D +PS S P T A TS R+
Sbjct: 134 LDPNWPISNPQTGRALRDDPQVMAPSQSRPAGNATSPAASTSTNRV 179
>AF003138-1|AAK21371.3| 469|Caenorhabditis elegans Hypothetical
protein F12B6.3 protein.
Length = 469
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +2
Query: 74 QQVVLKKSSSNSALRSRIRVLNHSDPRSDLTVNPRPRVREPRSDLT 211
++++LK SN+A+ + + L H +P D++ P P + + ++
Sbjct: 325 KKLILKSGKSNAAISTLVSYLKHFEPYHDVSSPPPPAPLDEKKSMS 370
>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical protein
F57C7.1b protein.
Length = 1087
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = +1
Query: 154 LRPDRESASPSTRTALRPDRDSASPSHSDPRSEPTRSANRTSEPRIEL*WVSNSA 318
+R D S S S D DSAS SD EP+RS + + PR L NS+
Sbjct: 977 MRSDSPSPSASRTGNQSSDSDSASDDSSD--DEPSRSNSNVAGPRRALELSGNSS 1029
>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical protein
F57C7.1a protein.
Length = 1209
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = +1
Query: 154 LRPDRESASPSTRTALRPDRDSASPSHSDPRSEPTRSANRTSEPRIEL*WVSNSA 318
+R D S S S D DSAS SD EP+RS + + PR L NS+
Sbjct: 977 MRSDSPSPSASRTGNQSSDSDSASDDSSD--DEPSRSNSNVAGPRRALELSGNSS 1029
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +1
Query: 67 KHSASSPQEVIKQQCTAFKDPRLEP**SALRPDRESASPSTRTALRPDRDSASPSHSDPR 246
K + SP ++ +A K P P R +S SP+ + + P R SPS S
Sbjct: 365 KSRSKSPPARRRRSPSASKSP---PAPRRRRSPSKSRSPAPKREIPPARRRRSPSASKSP 421
Query: 247 SEPTRSANRTSEP 285
P R+ +R+ P
Sbjct: 422 PAPKRAKSRSKSP 434
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 28.7 bits (61), Expect = 2.9
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +2
Query: 92 KSSSNSALRSRIRVLNHSDPRSDLTVNPRPRVREP--RSDLTVIPRPRATVIRVPNLRDP 265
K+S R IR + S PR +PR R R P R+ + P R + R P +R
Sbjct: 73 KNSPPKRKREPIRAPSASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSP-VRRS 131
Query: 266 RTEPVNRVSNYSGSRIPRNSR 328
R+ P +VS S S PR +
Sbjct: 132 RSPPRRQVSR-SRSPPPRRQQ 151
>U41543-11|AAP40530.1| 362|Caenorhabditis elegans Hypothetical
protein F46H5.2b protein.
Length = 362
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 166 RESASPSTRTALRPDRDSASPSHSDPRSEPTRSANRTSEPRIE 294
++ SPST+ +RP+ + P PTR A++ R E
Sbjct: 177 KQCYSPSTQQMVRPNISYSPSPRESPAQSPTRHAHKLKFQRAE 219
>U41543-10|AAP40531.1| 374|Caenorhabditis elegans Hypothetical
protein F46H5.2c protein.
Length = 374
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 166 RESASPSTRTALRPDRDSASPSHSDPRSEPTRSANRTSEPRIE 294
++ SPST+ +RP+ + P PTR A++ R E
Sbjct: 268 KQCYSPSTQQMVRPNISYSPSPRESPAQSPTRHAHKLKFQRAE 310
>U41543-9|AAB37021.2| 453|Caenorhabditis elegans Hypothetical
protein F46H5.2a protein.
Length = 453
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 166 RESASPSTRTALRPDRDSASPSHSDPRSEPTRSANRTSEPRIE 294
++ SPST+ +RP+ + P PTR A++ R E
Sbjct: 268 KQCYSPSTQQMVRPNISYSPSPRESPAQSPTRHAHKLKFQRAE 310
>AL117204-25|CAB55139.2| 528|Caenorhabditis elegans Hypothetical
protein Y116A8C.38 protein.
Length = 528
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 293 SIRGSLVRFADRVGSERGSLWLGDAES 213
+++G L++F DR+G+ L+L DA +
Sbjct: 273 NLQGHLIKFGDRIGTNERFLYLHDASA 299
>AL117204-15|CAB55129.1| 521|Caenorhabditis elegans Hypothetical
protein Y116A8C.24 protein.
Length = 521
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 293 SIRGSLVRFADRVGSERGSLWLGDAES 213
+++G L++F DR+G+ L+L DA +
Sbjct: 273 NLQGHLIKFGDRIGTNERFLYLHDASA 299
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +1
Query: 70 HSASSPQEVIKQQCTAFKDPRLEP**SALRPDRESASPSTRT-ALRPDRDSASPSHSDPR 246
HS++S + + A L P S RP S PST T + RP + P + R
Sbjct: 351 HSSASKKTEKPETPRAESPDPLPPPPSKKRPKEPSQEPSTNTSSKRPRTSTVVPMITRRR 410
Query: 247 SEPTRSANRTSEPRI 291
E T + +S P I
Sbjct: 411 KEGTPHSRMSSVPPI 425
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 172 SASPSTRTALRPDRDSASPSHSDPRSEPTRS 264
SA+P+TRTA+ P R +A P + PTR+
Sbjct: 341 SATPATRTAV-PPRATAPPKAAPASKAPTRA 370
>U00043-2|AAC77512.1| 242|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 1, isoform
a protein.
Length = 242
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +1
Query: 148 SALRPDRESASPSTRTALRPDRDSASPSHSDPRSEPTRSANRTSEPRIEL*WVSNSA*FE 327
S +R DR +A+ + + S+ SHS T S N S + + VSN E
Sbjct: 11 SRMRKDRAAAASPSSDIENSENPSSLASHSSSSGRMTPSKNTRSRKGVSVKDVSNHKITE 70
Query: 328 TYRARK 345
++ R+
Sbjct: 71 FFQVRR 76
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/83 (19%), Positives = 33/83 (39%)
Frame = +1
Query: 37 ELNSETEAVVKHSASSPQEVIKQQCTAFKDPRLEP**SALRPDRESASPSTRTALRPDRD 216
+++S + +S+P + + + P S D S+SPS ++ P+
Sbjct: 441 DVSSSPSESTESQSSTPSDASSSESASSSSPAATTEESGSSTDAVSSSPSGSSSESPNSS 500
Query: 217 SASPSHSDPRSEPTRSANRTSEP 285
+ S S T + ++EP
Sbjct: 501 TGGSDSSSSESVTTEPSGSSTEP 523
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/83 (19%), Positives = 33/83 (39%)
Frame = +1
Query: 37 ELNSETEAVVKHSASSPQEVIKQQCTAFKDPRLEP**SALRPDRESASPSTRTALRPDRD 216
+++S + +S+P + + + P S D S+SPS ++ P+
Sbjct: 441 DVSSSPSESTESQSSTPSDASSSESASSSSPAATTEESGSSTDAVSSSPSGSSSESPNSS 500
Query: 217 SASPSHSDPRSEPTRSANRTSEP 285
+ S S T + ++EP
Sbjct: 501 TGGSDSSSSESVTTEPSGSSTEP 523
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/83 (19%), Positives = 33/83 (39%)
Frame = +1
Query: 37 ELNSETEAVVKHSASSPQEVIKQQCTAFKDPRLEP**SALRPDRESASPSTRTALRPDRD 216
+++S + +S+P + + + P S D S+SPS ++ P+
Sbjct: 441 DVSSSPSESTESQSSTPSDASSSESASSSSPAATTEESGSSTDAVSSSPSGSSSESPNSS 500
Query: 217 SASPSHSDPRSEPTRSANRTSEP 285
+ S S T + ++EP
Sbjct: 501 TGGSDSSSSESVTTEPSGSSTEP 523
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/83 (19%), Positives = 33/83 (39%)
Frame = +1
Query: 37 ELNSETEAVVKHSASSPQEVIKQQCTAFKDPRLEP**SALRPDRESASPSTRTALRPDRD 216
+++S + +S+P + + + P S D S+SPS ++ P+
Sbjct: 441 DVSSSPSESTESQSSTPSDASSSESASSSSPAATTEESGSSTDAVSSSPSGSSSESPNSS 500
Query: 217 SASPSHSDPRSEPTRSANRTSEP 285
+ S S T + ++EP
Sbjct: 501 TGGSDSSSSESVTTEPSGSSTEP 523
>U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical
protein C37C3.1 protein.
Length = 470
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/46 (41%), Positives = 20/46 (43%)
Frame = +1
Query: 151 ALRPDRESASPSTRTALRPDRDSASPSHSDPRSEPTRSANRTSEPR 288
A R R S S S R R R S S S S PR P R + S R
Sbjct: 328 AQRHSRRSESTSRR---RSGRHSRSRSRSPPRKRPVRRSRSRSRSR 370
>U56963-5|AAB38122.3| 323|Caenorhabditis elegans Serpentine
receptor, class v protein30 protein.
Length = 323
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/39 (25%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 424 DYSEDYCVFL-YCLTVNRILLYVVLILCMLYILFNICVY 537
DY + +FL Y +++ + LY+++++C++ + F+ Y
Sbjct: 2 DYPPSWPIFLFYGISIPSLPLYIMVLICLIKLRFHSKTY 40
>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform a protein.
Length = 1050
Score = 27.5 bits (58), Expect = 6.7
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +2
Query: 89 KKSSSNSALRSRIRVLNHSDPRSDLTVNPRPRVREPRSDLTVIPRPRATVIRVPNLRDPR 268
KKS + L I+ L + ++ V P P V EP+ L + P P + I V N R
Sbjct: 740 KKSDIVTPLSQTIKPLGPGEQKNRFLVVPLPDVTEPK--LYLPPVPSSPTIPVENTLKRR 797
Query: 269 TEPVNRVSNYS 301
R + +S
Sbjct: 798 NSGTRRNALFS 808
>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform b protein.
Length = 1085
Score = 27.5 bits (58), Expect = 6.7
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +2
Query: 89 KKSSSNSALRSRIRVLNHSDPRSDLTVNPRPRVREPRSDLTVIPRPRATVIRVPNLRDPR 268
KKS + L I+ L + ++ V P P V EP+ L + P P + I V N R
Sbjct: 740 KKSDIVTPLSQTIKPLGPGEQKNRFLVVPLPDVTEPK--LYLPPVPSSPTIPVENTLKRR 797
Query: 269 TEPVNRVSNYS 301
R + +S
Sbjct: 798 NSGTRRNALFS 808
>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
chloride channel CLH-4b protein.
Length = 1084
Score = 27.5 bits (58), Expect = 6.7
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +2
Query: 89 KKSSSNSALRSRIRVLNHSDPRSDLTVNPRPRVREPRSDLTVIPRPRATVIRVPNLRDPR 268
KKS + L I+ L + ++ V P P V EP+ L + P P + I V N R
Sbjct: 739 KKSDIVTPLSQTIKPLGPGEQKNRFLVVPLPDVTEPK--LYLPPVPSSPTIPVENTLKRR 796
Query: 269 TEPVNRVSNYS 301
R + +S
Sbjct: 797 NSGTRRNALFS 807
>AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 978
Score = 27.5 bits (58), Expect = 6.7
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +2
Query: 89 KKSSSNSALRSRIRVLNHSDPRSDLTVNPRPRVREPRSDLTVIPRPRATVIRVPNLRDPR 268
KKS + L I+ L + ++ V P P V EP+ L + P P + I V N R
Sbjct: 668 KKSDIVTPLSQTIKPLGPGEQKNRFLVVPLPDVTEPK--LYLPPVPSSPTIPVENTLKRR 725
Query: 269 TEPVNRVSNYS 301
R + +S
Sbjct: 726 NSGTRRNALFS 736
>U88167-7|AAB42229.1| 378|Caenorhabditis elegans Hypothetical
protein D2092.2 protein.
Length = 378
Score = 27.1 bits (57), Expect = 8.9
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Frame = +1
Query: 64 VKH---SASSP-QEVIKQQCTAFKDPRLEP**SALRPDRES-ASPSTRTALRPDRDSASP 228
VKH S+SSP +E + + PR+ S PD S P+ R+ + S+SP
Sbjct: 252 VKHDFQSSSSPSEEPLDMSQKSMPAPRV----STASPDPPSFVLPTARSPINTS-PSSSP 306
Query: 229 SHSDPRSEPTRSANRTSEPR 288
S P++ ++A+ S P+
Sbjct: 307 KASSPKASSPKAASPVSSPK 326
>L23648-3|AAN63386.1| 438|Caenorhabditis elegans Cyclin t protein
1.1, isoform b protein.
Length = 438
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 158 DLTVNPRPRVREPRSDLTV 214
D TVN RPR PR +LTV
Sbjct: 313 DSTVNVRPRAYVPRDELTV 331
>L23648-2|AAN63387.1| 183|Caenorhabditis elegans Cyclin t protein
1.1, isoform c protein.
Length = 183
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 158 DLTVNPRPRVREPRSDLTV 214
D TVN RPR PR +LTV
Sbjct: 28 DSTVNVRPRAYVPRDELTV 46
>L23648-1|AAA28034.1| 468|Caenorhabditis elegans Cyclin t protein
1.1, isoform a protein.
Length = 468
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 158 DLTVNPRPRVREPRSDLTV 214
D TVN RPR PR +LTV
Sbjct: 313 DSTVNVRPRAYVPRDELTV 331
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 27.1 bits (57), Expect = 8.9
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Frame = +2
Query: 11 SLSEEETTKN*TLRQKQ*SNIQQVVLKKSSSNSALRSRIRVLNHSD----PRSDLTVNPR 178
S+S+ + QKQ +I +V ++S+ SAL + + S P S P
Sbjct: 460 SMSDPGSDSETEEHQKQEKHIPAMVTRRSARLSALPVTPKKASSSSKMPPPPSPSPSTPG 519
Query: 179 PRVREPRSDLTVIPRPRATVIRVPNLRDPRTEPVNRVS 292
R R PR+ T+ P A + PR+ +VS
Sbjct: 520 RRGRRPRTLSTMSMEPAAAAVTPAPRGRPRSRSAAKVS 557
>AC024882-17|AAF60937.1| 321|Caenorhabditis elegans Serpentine
receptor, class z protein28 protein.
Length = 321
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 418 YRDYSEDYCVFLYCLTVNRILLYVVLILCM-LYILF 522
Y+ YC FL +T N L LILC+ L+ L+
Sbjct: 68 YKMSKNTYCTFLAIVTSNAFLNLSTLILCVCLFYLY 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,226,047
Number of Sequences: 27780
Number of extensions: 189400
Number of successful extensions: 806
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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