Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J07
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   174   8e-45
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   174   8e-45
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi...    28   0.98 
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    26   4.0  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   5.2  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    25   5.2  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   6.9  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   9.1  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  174 bits (423), Expect = 8e-45
 Identities = 82/124 (66%), Positives = 94/124 (75%)
 Frame = +1

Query: 82  LGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 261
           +GPQ   GE+VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 262 SAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 441
           +AQD A KCK +GITALHIK+RA            AQ          M+IGRIEDVTP+P
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124

Query: 442 SDST 453
           +DST
Sbjct: 125 TDST 128


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  174 bits (423), Expect = 8e-45
 Identities = 82/124 (66%), Positives = 94/124 (75%)
 Frame = +1

Query: 82  LGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 261
           +GPQ   GE+VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 262 SAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 441
           +AQD A KCK +GITALHIK+RA            AQ          M+IGRIEDVTP+P
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124

Query: 442 SDST 453
           +DST
Sbjct: 125 TDST 128


>SPAC343.03 |apc11||anaphase-promoting complex subunit
           Apc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 270 GCC*EM*NPGDNCP 311
           GCC +  +PGDNCP
Sbjct: 33  GCCPQCTSPGDNCP 46


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 306 SYPQGFTFLSNILCRQHSGVG*SLITISLHFHASGNTG 193
           S+P     LS+ + +QH G+  SL++  +++  S   G
Sbjct: 415 SFPAATLMLSDFVPKQHQGIAASLVSTVVNYSISIGLG 452


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = -3

Query: 222 LHFHASGNTGNSFSTGQIGNVHE-----CVIEGGEYVCHPEYYLTHQ 97
           LH HA   T +SFST  +    E      ++E    V H   YL +Q
Sbjct: 433 LHRHAHSLTSSSFSTKTLATTKEIQNSPTLVESSTVVHHDPSYLQNQ 479


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 132 YVCHPEYYL-THQVLGTKSHLNLLFC 58
           YVC PEY++  H V  T++H  ++ C
Sbjct: 307 YVCSPEYHMFAHPV--TQNHYMVMLC 330


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 198 TGNSFSTGQIGNVHECVIEGGEYV 127
           T   FS  Q   +HEC+++ G YV
Sbjct: 469 TKRLFSLLQSETIHECLVKAGGYV 492


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -3

Query: 273  ILCRQHSGVG*SLITISLHFHASGNTGNSFSTGQIGNVHECV 148
            + CRQ      SL  + L ++ S    N FST      +  V
Sbjct: 963  VFCRQLEDANVSLTAVGLFWNVSDTLKNMFSTSDFSCAYNSV 1004


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,974
Number of Sequences: 5004
Number of extensions: 42837
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)