Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J07
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 185 2e-47
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 173 5e-44
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 167 6e-42
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 49 2e-06
09_02_0373 - 8098060-8098229,8098316-8098375,8098486-8098674,809... 33 0.19
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 29 1.7
04_01_0296 + 3927741-3927960,3928257-3928900 28 5.3
06_03_1124 - 27789108-27789248,27789645-27789734 27 7.0
01_05_0772 + 25056973-25057285,25057678-25058006,25058113-250583... 27 7.0
12_01_0826 - 7629892-7629964,7630052-7630135,7630216-7630314,763... 27 9.2
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 27 9.2
09_04_0520 + 18286435-18287279,18287818-18288697 27 9.2
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 27 9.2
08_02_1092 + 24267737-24268641,24269005-24269884 27 9.2
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 27 9.2
02_02_0286 - 8589736-8590857 27 9.2
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54... 27 9.2
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 185 bits (451), Expect = 2e-47
Identities = 92/137 (67%), Positives = 103/137 (75%)
Frame = +1
Query: 43 RKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 222
+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 27 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 85
Query: 223 ADRDEASPYAAMLSAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 402
ADRDE+SPYAAML++QDVA++CK LGITALHIKLRA AQ
Sbjct: 86 ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 145
Query: 403 MKIGRIEDVTPVPSDST 453
MKIGRIEDVTPVP+DST
Sbjct: 146 MKIGRIEDVTPVPTDST 162
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 173 bits (422), Expect = 5e-44
Identities = 92/151 (60%), Positives = 103/151 (68%), Gaps = 11/151 (7%)
Frame = +1
Query: 34 MAPRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 213
M+ RK +E VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60
Query: 214 KVKADRDEASPYAAMLSAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 393
KVKADRDE+SPYAAML++QDVA++CK LGITALHIKLRA AQ
Sbjct: 61 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
Query: 394 XXXMKIGRI-----------EDVTPVPSDST 453
MKIGRI EDVTPVP+DST
Sbjct: 121 RSGMKIGRIADDVLSIFCHTEDVTPVPTDST 151
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 167 bits (405), Expect = 6e-42
Identities = 84/129 (65%), Positives = 94/129 (72%)
Frame = +1
Query: 34 MAPRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 213
M+ RK + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 214 KVKADRDEASPYAAMLSAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 393
KVKADRDE+SPYAAML++QDVA++CK LGITALHIKLRA AQ
Sbjct: 60 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 119
Query: 394 XXXMKIGRI 420
MKIGRI
Sbjct: 120 RSGMKIGRI 128
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 199 VTGGMKVKADRDEASPYAAMLSAQDVAEKCK 291
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 199 VTGGMKVKADRDEASPYAAMLSAQDVA 279
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>09_02_0373 -
8098060-8098229,8098316-8098375,8098486-8098674,
8098994-8099108,8099374-8099427,8099600-8099709,
8099792-8099879,8099969-8100181
Length = 332
Score = 32.7 bits (71), Expect = 0.19
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -3
Query: 282 LSNILCRQHSGVG*SLITISLHFHASGNTGNSFSTGQIGNVHECVIEGGEYVCHPEYY-L 106
L NI+ H VG ++T L + GNT ++ IG V C I GG Y +Y L
Sbjct: 37 LLNIIEPFHRFVGRDMMT-DLRYPLKGNTVPFWAVPLIGIVLPCAIFGGIYFKKKNFYDL 95
Query: 105 THQVLG 88
H +LG
Sbjct: 96 HHGILG 101
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -2
Query: 121 PRILSHPPSAGDQESPEPPLLQLCFFSGPW 32
PR S +AGD PEPPL L F S W
Sbjct: 10 PRRGSRHAAAGDLRPPEPPLDPLEFLSRSW 39
>04_01_0296 + 3927741-3927960,3928257-3928900
Length = 287
Score = 27.9 bits (59), Expect = 5.3
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -3
Query: 495 KKLQPASSSSTLPAC--GVRRHRGHIFNAANLHAGTSESTESRLGTRSRSLCLVTSSRTE 322
+K + SSSST C V R G + LHA TSES ++ R+ + L+T S +
Sbjct: 215 RKEREGSSSSTPCRCMRQVGRQLGMRPDGPKLHATTSESQAGQVPVRTGGVHLMTYSGGQ 274
Query: 321 LNVQ 310
+Q
Sbjct: 275 PTLQ 278
>06_03_1124 - 27789108-27789248,27789645-27789734
Length = 76
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3
Query: 345 LVTSSRTELNVQGSYPQGFTFLSNILCRQHSG 250
+VT+S+TE NV + PQG T++++ CR G
Sbjct: 30 MVTASQTE-NVGKAGPQGRTYVTDNSCRTSPG 60
>01_05_0772 +
25056973-25057285,25057678-25058006,25058113-25058360,
25058481-25059396
Length = 601
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 208 GMKVKADRDEASPYAAMLSAQDVAEKCK 291
G+ +K++ D P +S +DV E+CK
Sbjct: 341 GLMLKSNMDSGEPSNLRMSTEDVIEECK 368
>12_01_0826 -
7629892-7629964,7630052-7630135,7630216-7630314,
7630391-7630449,7630804-7630888,7630961-7631058,
7631209-7631355,7631433-7631525,7631642-7631770,
7631859-7631912,7632133-7632309,7632396-7632481,
7634234-7634324,7634433-7634531,7634618-7634694,
7634784-7634952,7639551-7639642,7639712-7639825,
7640933-7641038,7641133-7641183,7641315-7641416,
7642581-7642655,7642768-7642965,7642998-7643123
Length = 827
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 202 TGGMKVKADRDEASPYAAMLSAQDVAEKCKTLGITA 309
+GG+++K D E + +A + EK + LGI A
Sbjct: 743 SGGLRLKRDITEYGEFVRSFNAPSIDEKFELLGIMA 778
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 124 AHIFASFNDTFVHVTDLSGRETIARVT 204
+H+++ D V++TDLS RE++ T
Sbjct: 280 SHVYSGGRDQSVYLTDLSNRESVLLCT 306
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 27.1 bits (57), Expect = 9.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 128 CATPNTISPTKCWGPR 81
C P+ ++PT C+GPR
Sbjct: 364 CIQPSCVAPTTCFGPR 379
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 67 EVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVT 168
E+++ + P G I +H FAS++DT + +T
Sbjct: 140 ELEIRIKPDPEAGTITITRSHCFASYSDTGIGMT 173
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 27.1 bits (57), Expect = 9.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 128 CATPNTISPTKCWGPR 81
C P+ ++PT C+GPR
Sbjct: 384 CIQPSCVAPTTCFGPR 399
>07_03_0562 + 19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 245 GEASSRSAFTFMPPVTRAIVSRPDRSVTCTNVSLKEANMCATPNTISPT 99
G SSR+ F+ PP R S P V + +S A+ + P +SPT
Sbjct: 860 GPDSSRNIFSAFPPAVRENQSIPSAPVAQSWISF-GASSESKPTIVSPT 907
>02_02_0286 - 8589736-8590857
Length = 373
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 54 SCKRGGSGDSWSPALGG*DSIRGG 125
S G G W PALGG D +GG
Sbjct: 284 SVMAGLGGGQWPPALGGADEQQGG 307
>02_01_0077 -
546033-546223,546314-546566,546635-546865,547165-547331,
547369-548008
Length = 493
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 121 PRILSHPPSAGDQESPEPPL 62
P + PPS G +SPEPPL
Sbjct: 44 PGLPVSPPSPGYSDSPEPPL 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,791,239
Number of Sequences: 37544
Number of extensions: 349796
Number of successful extensions: 1176
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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