Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J07
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   192   1e-49
AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical...    30   1.2  
Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U23448-3|AAO26017.1|  612|Caenorhabditis elegans Egg laying defe...    27   6.2  
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe...    27   6.2  
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe...    27   6.2  
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.     27   6.2  
AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical ...    27   8.2  
AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  192 bits (468), Expect = 1e-49
 Identities = 94/141 (66%), Positives = 106/141 (75%), Gaps = 1/141 (0%)
 Frame = +1

Query: 34  MAP-RKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 210
           MAP RK K  +E+  V+LGPQ   GE++FGVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 211 MKVKADRDEASPYAAMLSAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXX 390
           MKVKADRDE+SPYAAML+AQDVA++CK LGI ALHIKLRA            AQ      
Sbjct: 61  MKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRAL 120

Query: 391 XXXXMKIGRIEDVTPVPSDST 453
               MKIGRIEDVTP+PSD T
Sbjct: 121 ARAGMKIGRIEDVTPIPSDCT 141


>AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical
           protein Y19D10A.10 protein.
          Length = 703

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -3

Query: 285 FLSNILCRQHSGVG*SLITISLHFHASGNTGNSFSTGQIGNVHECVIEGGEYVCHP-EYY 109
           F S+ LCR   G+G S+I  S+     G    S  T     +  C ++ G  +C P   +
Sbjct: 133 FYSSFLCRVLQGMGSSIIFTSVGV-VPGVWAPSNETNTFTAILSCALQLGNIICMPVSGF 191

Query: 108 LTHQVLGTKS 79
           L    LG +S
Sbjct: 192 LCESSLGWRS 201


>AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical
           protein F56A4.11 protein.
          Length = 746

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -3

Query: 285 FLSNILCRQHSGVG*SLITISLHFHASGNTGNSFSTGQIGNVHECVIEGGEYVCHP-EYY 109
           F S+ LCR   G+G S+I  S+     G    S  T     +  C ++ G  +C P   +
Sbjct: 176 FYSSFLCRVLQGMGSSIIFTSVGV-VPGVWAPSNETNTFTAILSCALQLGNIICMPVSGF 234

Query: 108 LTHQVLGTKS 79
           L    LG +S
Sbjct: 235 LCESSLGWRS 244


>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 4   TRAFKAKG*AMAPRKNKVAKEEVQVTLGPQHLVGE 108
           +R  K KG   + + N+  K + +VT  P+HLVG+
Sbjct: 306 SRKPKGKGLKKSKKLNQKPKSDEEVTKQPRHLVGK 340


>U23448-3|AAO26017.1|  612|Caenorhabditis elegans Egg laying
           defective protein 27,isoform c protein.
          Length = 612

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 394 EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 296
           ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 408 ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 440


>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defective
            protein 27,isoform b protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 394  EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 296
            ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 920  ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 952


>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective
            protein 27,isoform a protein.
          Length = 1129

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 394  EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 296
            ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 925  ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 957


>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
          Length = 1129

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 394  EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 296
            ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 925  ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 957


>AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical
           protein F18A12.8b protein.
          Length = 816

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 212 MPPVTRAIVSRPDRSVTCTNVSLKEANMCATPNTI 108
           +PP+     + P+  VT +    KE  +C+TP  +
Sbjct: 133 VPPIVPEAPTSPEPEVTTSTEKPKEPEVCSTPGCV 167


>AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical
           protein F18A12.8a protein.
          Length = 848

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 212 MPPVTRAIVSRPDRSVTCTNVSLKEANMCATPNTI 108
           +PP+     + P+  VT +    KE  +C+TP  +
Sbjct: 133 VPPIVPEAPTSPEPEVTTSTEKPKEPEVCSTPGCV 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,615,701
Number of Sequences: 27780
Number of extensions: 270139
Number of successful extensions: 796
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)