Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J05
         (326 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0156 + 5070962-5072351,5072466-5073139                           26   8.0  
08_02_0558 + 18668856-18668926,18669064-18669175,18669834-186698...    26   8.0  

>09_02_0156 + 5070962-5072351,5072466-5073139
          Length = 687

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 154 G*SVKGGRCVRGPNKWYMSAVFNYYCFC 237
           G S+KGG C R P  + ++ +F +Y +C
Sbjct: 16  GVSLKGGNCPRSPPHFSIT-LFYFYKYC 42


>08_02_0558 +
           18668856-18668926,18669064-18669175,18669834-18669887,
           18670121-18670191,18670291-18670372,18670463-18670559,
           18670928-18670998
          Length = 185

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 169 GGRCVRGPNKWYMSAVFNYY 228
           G  C+R PNKW  S  FNY+
Sbjct: 133 GKYCLRMPNKWNFS--FNYF 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,992,724
Number of Sequences: 37544
Number of extensions: 40842
Number of successful extensions: 42
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)