Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J03
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    79   5e-16
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    50   2e-07
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   3.5  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    26   3.5  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   4.7  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    25   6.2  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    25   6.2  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   6.2  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.2  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   8.2  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   8.2  

>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 78.6 bits (185), Expect = 5e-16
 Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 5/103 (4%)
 Frame = +2

Query: 200 SECPIQQNDRDINPYXXXXXXXXXXXXDQPFP--LPTQRQVSTIPRAMPD---GSTEFWV 364
           S+CP+    RD                D P P  LPT+R++STIP+ + +   G  E W+
Sbjct: 12  SKCPVPPEVRDAW-LKSHGGKKPSEVHDTPHPTMLPTEREISTIPKVVTESDSGKEEKWI 70

Query: 365 YPSQQMFWNAMLRKGWRWNNEDINPKDMEDIIKIHNAHNEQAW 493
           YPSQQMF++AM RK W     + +P+DM+ I+ IHNA NE+AW
Sbjct: 71  YPSQQMFFDAMKRKNW-----NPHPEDMKTIVPIHNAVNERAW 108


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 29/71 (40%), Positives = 40/71 (56%)
 Frame = +2

Query: 281 DQPFPLPTQRQVSTIPRAMPDGSTEFWVYPSQQMFWNAMLRKGWRWNNEDINPKDMEDII 460
           DQ   L T R  S+IP+   DG    W YPS Q  +NAM RKG+R + E++       ++
Sbjct: 199 DQVVGLETTRTTSSIPKV--DGKN--WEYPSPQQMYNAMWRKGYRDSGENV-----PIMV 249

Query: 461 KIHNAHNEQAW 493
           ++HN  NE AW
Sbjct: 250 QVHNFLNEGAW 260



 Score = 33.1 bits (72), Expect = 0.023
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 128 SNPPPECPMHKKTDEN 175
           +NPPP CPMHK ++EN
Sbjct: 82  ANPPPGCPMHKASNEN 97


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 106 FIIGLCCYFIAHVCDLRKTKF 44
           +++ LCCY+I   C+ +K  F
Sbjct: 316 YVLLLCCYYIFDTCNGQKNHF 336


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 80  KVTAEAYDKTTT-GLKNSNPPPECPMHKKTDENEAPKKKTYSECPIQQNDRDINP 241
           K +A  ++K +  G KN   PP+    +KT+EN   KK T S  P ++  +  NP
Sbjct: 143 KGSAGNHEKNSVNGQKNPEMPPK---RRKTEEN---KKPTKSALPKKEASKKKNP 191


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -1

Query: 490 SLFIMSIVYFDNVLHIFRVNILI--VPTPSFTEHCIPKHLLTRVNPKLSRTI 341
           SL + + V  D   H++  N+ +       FTE  IPK  L ++N  L  T+
Sbjct: 72  SLELQNSVSNDMFKHVYSQNVELNHKTQVDFTEQLIPKKSLNKLNGTLRETM 123


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 412 PSFTEHCIPKHLLTRVNPKLSRT 344
           PSFT++  P+ +   +NP+ SRT
Sbjct: 325 PSFTQNTNPQAVTGTMNPQASRT 347


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 314 VSTIPRAMPDGSTEFWVYPSQQMF 385
           V+T+ + +PDG   F   PS++ F
Sbjct: 237 VNTVRKTLPDGQVTFVAKPSKKSF 260


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 478 MSIVYFDNVLHIFRVNILIVPTPSFTEHCIPKHLLTRVN 362
           +S ++  ++LH       I PTP   EH + K L++R+N
Sbjct: 237 VSRIFHQDILHFIDY---ITPTPE--EHAVRKTLVSRIN 270


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 252 CHQLTNSLLQTNRFLCQLSVKCQQYQ 329
           C QL N  + T   LC + + C ++Q
Sbjct: 520 CEQLQNGFIPTCERLCTILLSCGRHQ 545


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 301  WQRKRLVWSRLLVSWWHHIIRIYVSIILL 215
            WQ K L +S  L   W    ++Y   ILL
Sbjct: 991  WQEKELAFSSTLSEAWRTRRKMYAEAILL 1019


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 419 NNEDINPKDMEDIIKIHNAHNEQ 487
           +NE+++  D ED    H AH +Q
Sbjct: 363 SNEEVSDSDEEDSDSKHTAHGQQ 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,955
Number of Sequences: 5004
Number of extensions: 37790
Number of successful extensions: 129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)