Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J03
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52...    30   1.2  
03_05_0324 - 23121401-23121465,23121507-23122059                       29   2.7  
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484...    27   6.2  
10_08_0460 - 18098187-18098248,18098331-18098399,18098468-180994...    27   8.2  
07_03_0036 + 12694304-12694408,12694551-12694652,12694867-126949...    27   8.2  

>02_01_0075 -
           522554-522616,522742-522748,523033-523136,523237-523368,
           525209-525401,525978-526330,526693-526791,526864-526935,
           527062-527213,527338-527386,527755-527885,528067-528307,
           528392-528565,528656-528797,529236-529282,529370-529450,
           530170-530271,530345-530440,531437-531444,531575-531616,
           531830-531894,534761-534853,534888-534959,535303-535509,
           536318-537226,537503-538158
          Length = 1429

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -1

Query: 340 RHCSWYC*HLTLSWQRKRLVWSRLLVSWWHHIIRIYVSIILLNGTLRV 197
           + C W C      +Q      +   +SWW  +  + +S++L + T RV
Sbjct: 611 KKCFWVCLSCCAVYQLCDFACAVAFISWWGWVGEVRISLLLFDRTTRV 658


>03_05_0324 - 23121401-23121465,23121507-23122059
          Length = 205

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +2

Query: 56  T*VTNMGNKVTAEAYDKTTTGL---KNSNPPPECPMHKKTDENEAPKKKTYSECPIQQND 226
           T V +M     AEA + T+T     K+ N    CP  KK +      + T + CPI +  
Sbjct: 99  TPVDSMSKDPPAEAENGTSTTSGPEKDPNAAKSCPPDKKHEPTRITSEATRTWCPIHKTR 158

Query: 227 R 229
           R
Sbjct: 159 R 159


>03_03_0168 -
           15047383-15047847,15048085-15048192,15048313-15048464,
           15048555-15048752,15049553-15050856,15051281-15051354,
           15051458-15051492,15052853-15053015
          Length = 832

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +2

Query: 68  NMGNKVTAEAYDKTTTGLKNSNPPP-ECPMHKKTDENEAP 184
           N GN++ AE  D     LK   PPP   P+   T   E P
Sbjct: 700 NNGNRLVAEFVDPQEVKLKLEPPPPAAAPISPATTPKEPP 739


>10_08_0460 - 18098187-18098248,18098331-18098399,18098468-18099434,
            18100089-18100808,18100942-18101031,18101076-18101138,
            18101223-18101366,18101471-18101527,18101606-18101680,
            18101757-18101836,18101937-18102050,18102166-18102258,
            18102470-18102553,18102812-18102859,18105207-18105337,
            18105903-18106135
          Length = 1009

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 62   VTNMGNKVTAEAYDKTTTGLKNSNPPPECPMHK 160
            +TN+GNK       KTT   K +N   E P  K
Sbjct: 971  ITNIGNKQEEMKTSKTTKRRKKNNTQEETPKEK 1003


>07_03_0036 +
           12694304-12694408,12694551-12694652,12694867-12694947,
           12696475-12696525,12697308-12697473,12698759-12698877,
           12698975-12699073,12699684-12699764,12699845-12699927,
           12701177-12701402,12704272-12704439,12706408-12706800
          Length = 557

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 341 DGSTEFWVYPS--QQMFWNAMLRKGWRWNNEDINPKDMEDI-IKIHNAHNEQAW 493
           D   E+  +P   Q +FW  +   GW+W  +++  K   DI +K  N H  + W
Sbjct: 56  DNFPEWISFPQYEQMIFWVIVSAVGWKWYKKEL-CKFFGDIEVKWLNKHLSKLW 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,915,821
Number of Sequences: 37544
Number of extensions: 257029
Number of successful extensions: 750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)