Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J03
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-4|CAA88969.1|  280|Caenorhabditis elegans Hypothetical pr...   111   4e-25
Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical pr...    27   5.6  
U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL132862-9|CAB70229.1|  129|Caenorhabditis elegans Hypothetical ...    27   9.8  
AL132862-7|CAB70228.1|  129|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z49130-4|CAA88969.1|  280|Caenorhabditis elegans Hypothetical
           protein T06D8.6 protein.
          Length = 280

 Score =  111 bits (266), Expect = 4e-25
 Identities = 50/97 (51%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
 Frame = +2

Query: 206 CPIQQNDRDINPYXXXXXXXXXXXX-DQPFPLPTQRQVSTIPRAMPDGSTEFWVYPSQQM 382
           CP+  +   INP              DQPF LPT+R+ STIP+A  +  TE W YPS QM
Sbjct: 57  CPVGADKASINPLNNELEHPNQKPAPDQPFALPTKREKSTIPKAGTE--TETWTYPSPQM 114

Query: 383 FWNAMLRKGWRWNNEDINPKDMEDIIKIHNAHNEQAW 493
           FWNAML+KGWRW ++ ++  DME+II IHNA+NE+AW
Sbjct: 115 FWNAMLKKGWRWQDDSLSKSDMENIISIHNANNEEAW 151


>Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical
           protein R17.3 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 361 PKLSRTIRHCSWYC*HLTLSWQRKRLVWSRLL 266
           P ++  ++  ++YC H T+ W  +  V SRLL
Sbjct: 335 PNVAEKMKKATYYCVHYTIDWVNRNCV-SRLL 365


>Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical
           protein F59E10.3 protein.
          Length = 184

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 74  GNKVTAEAYDKTTTGLKNSNPPPECPMHKKTDEN 175
           GN+V A+ YD+TT G        E  +  KT  N
Sbjct: 24  GNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRN 57


>U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical
           protein C03B1.13 protein.
          Length = 436

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 484 FIMSIVYFDNVLHIFRVNILIVPTPSFTEHCIPKHLLTRVNPKL 353
           FIM I     +L +  V I+  PTP++  H  P+ +   ++ KL
Sbjct: 124 FIMQISAVIPILFLLFVLIITPPTPNYLSHFHPECIHEAIHSKL 167


>AL132862-9|CAB70229.1|  129|Caenorhabditis elegans Hypothetical
           protein Y73F8A.14 protein.
          Length = 129

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 119 LKNSNPPPECPMHKKTDENEAPKKKTYS 202
           L N NP P  P +   DEN++  K T S
Sbjct: 69  LTNPNPEPVIPKYSNFDENDSKIKFTVS 96


>AL132862-7|CAB70228.1|  129|Caenorhabditis elegans Hypothetical
           protein Y73F8A.12 protein.
          Length = 129

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 119 LKNSNPPPECPMHKKTDENEAPKKKTYS 202
           L N NP P  P +   DEN++  K T S
Sbjct: 69  LTNPNPEPVIPKYSNFDENDSKIKFTVS 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,036,158
Number of Sequences: 27780
Number of extensions: 217835
Number of successful extensions: 665
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)