Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_J01
(446 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle nu... 59 2e-11
AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless prot... 58 3e-11
AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholo... 58 3e-11
AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger tran... 52 2e-09
AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone recepto... 52 2e-09
AM292354-1|CAL23166.1| 321|Tribolium castaneum gustatory recept... 26 0.14
AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory recept... 22 3.0
EU019711-1|ABU25223.1| 534|Tribolium castaneum chitin deacetyla... 21 5.3
AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription fa... 21 5.3
EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetyla... 20 9.3
EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetyla... 20 9.3
>AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle
nuclear receptor protein.
Length = 407
Score = 59.3 bits (137), Expect = 2e-11
Identities = 23/52 (44%), Positives = 38/52 (73%)
Frame = +3
Query: 267 QGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVR 422
+GFF+R++++ + Y C + + C I + RNRCQYCR +KC+ +GM R+AV+
Sbjct: 107 KGFFKRTVRKDLSYA-CREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQ 157
>AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless
protein.
Length = 302
Score = 58.4 bits (135), Expect = 3e-11
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +3
Query: 258 CDP-QGFFRRSIQQKIQYRPCTKNQ-QCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGR 431
CD GFF+RSI++ QY K++ C I + +RN+C+ CRLKKC VGM++DAV+ R
Sbjct: 55 CDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQHER 114
Query: 432 VPK 440
P+
Sbjct: 115 GPR 117
>AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholog
protein.
Length = 406
Score = 58.4 bits (135), Expect = 3e-11
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +3
Query: 258 CDP-QGFFRRSIQQKIQYRPCTKNQ-QCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGR 431
CD GFF+RSI++ QY K++ C I + +RN+C+ CRLKKC VGM++DAV+ R
Sbjct: 55 CDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQHER 114
Query: 432 VPK 440
P+
Sbjct: 115 GPR 117
>AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger
transcription factor protein.
Length = 228
Score = 52.4 bits (120), Expect = 2e-09
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +3
Query: 267 QGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGR 431
+ FF R+ C N +C I + NR C+ CRL+KC+ VGMS+ R+GR
Sbjct: 26 KSFFGRTYNNISSISECKNNGECVINKKNRTACKACRLRKCLLVGMSKSGSRYGR 80
>AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone receptor
(isoform A) protein.
Length = 549
Score = 52.0 bits (119), Expect = 2e-09
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +3
Query: 267 QGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAV 419
+GFFRRSI + Y+ C C I R +CQ CRLKKC++VGM + V
Sbjct: 209 KGFFRRSITKNAVYQ-CKYGNNCEIDMYMRRKCQECRLKKCLSVGMRPECV 258
>AM292354-1|CAL23166.1| 321|Tribolium castaneum gustatory receptor
candidate 33 protein.
Length = 321
Score = 26.2 bits (55), Expect = 0.14
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -2
Query: 394 AMHFFRRQY---WHRFLLILRIEHCWFL 320
A++++R+QY WHR+ L +C FL
Sbjct: 118 AVYYWRQQYEDFWHRYTLSFIENYCQFL 145
>AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory receptor
candidate 19 protein.
Length = 355
Score = 21.8 bits (44), Expect = 3.0
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 358 FLLILRIEHCWFLVQGLY*IFCC 290
FLL + C F++ ++ +FCC
Sbjct: 162 FLLCIYHFFCAFIIFTMHLLFCC 184
>EU019711-1|ABU25223.1| 534|Tribolium castaneum chitin deacetylase
1 protein.
Length = 534
Score = 21.0 bits (42), Expect = 5.3
Identities = 6/9 (66%), Positives = 9/9 (100%)
Frame = +2
Query: 380 EKMHRRGHE 406
++MHR+GHE
Sbjct: 244 QEMHRKGHE 252
>AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription
factor protein.
Length = 441
Score = 21.0 bits (42), Expect = 5.3
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = -2
Query: 442 RLGTRPNRTASLLMPTAMHFFRRQYWHRFLLILRIEH 332
R+GT P R S P Y + + L+I++
Sbjct: 160 RVGTEPRRVISFPFPETQFIAVTAYQNEEVTALKIKY 196
>EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetylase
2B protein.
Length = 528
Score = 20.2 bits (40), Expect = 9.3
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2
Query: 380 EKMHRRGHE 406
+ +HRRGHE
Sbjct: 236 QDLHRRGHE 244
>EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetylase
2A protein.
Length = 535
Score = 20.2 bits (40), Expect = 9.3
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2
Query: 380 EKMHRRGHE 406
+ +HRRGHE
Sbjct: 243 QDLHRRGHE 251
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,999
Number of Sequences: 336
Number of extensions: 1457
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10090848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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