Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J01
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    28   0.75 
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    26   3.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   5.3  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   5.3  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   5.3  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   7.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   7.0  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 27.9 bits (59), Expect = 0.75
 Identities = 23/77 (29%), Positives = 39/77 (50%)
 Frame = +1

Query: 124 PCRVAPSCASGIRCW*ACWNRAASLATRVALVTTVQILSETLSAAVILRASSVAPYNRRF 303
           P  VA S AS +    A    ++ + +  + V+TV I S  +SAA    AS   P +  +
Sbjct: 186 PTTVAASVASSVDTDSASATISSVVDSATSSVSTV-IPSSIISAAPPDSASESTPASTSY 244

Query: 304 STDPAPRTSSAQSSGST 354
           ++     TS++ +SGS+
Sbjct: 245 ASSTTSATSTSTTSGSS 261


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 391 MHFFRRQYWHRFLLILRIEHCWFLV 317
           + +FR+  WH F  +L    CWFL+
Sbjct: 337 IQYFRQ--WHHFKHLLGTSVCWFLL 359


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 294  QKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMS 407
            +  QY PCT  QQ  +    +N  +Y   K     G S
Sbjct: 1321 ESFQYFPCTPMQQALLASSEKNGVEYYYNKYLFETGKS 1358


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 220 TTVQILSETLSAAVILRASSVAPYNRRFSTDPAPRTSSAQSSGS 351
           +T+   S T   A +  +SS+   +   +T P P TSS  +S S
Sbjct: 89  STISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSS 132


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 234 IERDSKCRCDPQGFFRRSIQQKIQYRPCTK--NQQCSILRINRN-RCQYC 374
           IER + C C   G +  + ++++ +  C+   +Q+C    I  N RC  C
Sbjct: 263 IERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTC 312


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +1

Query: 145  CASGIRCW*ACWNRAASLATRVALVTTVQILSETLSAAVILRASSVAPYNRRFSTDPAPR 324
            CAS   C   C   + SL    + V+T+  +  TL        ++ + YN  FS+ P P+
Sbjct: 1566 CASFANCV-YCSRCSDSLLGEESTVSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQ 1624

Query: 325  --TSSAQSSGST 354
               SS  S+ +T
Sbjct: 1625 PGNSSGMSAMNT 1636


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +1

Query: 145  CASGIRCW*ACWNRAASLATRVALVTTVQILSETLSAAVILRASSVAPYNRRFSTDPAPR 324
            CAS   C   C   + SL    + V+T+  +  TL        ++ + YN  FS+ P P+
Sbjct: 1566 CASFANCV-YCSRCSDSLLGEESTVSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQ 1624

Query: 325  --TSSAQSSGST 354
               SS  S+ +T
Sbjct: 1625 PGNSSGMSAMNT 1636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,289
Number of Sequences: 5004
Number of extensions: 22354
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)