Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_J01
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0361 - 17979979-17979982,17980093-17981045                       30   0.74 
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057...    29   2.3  
11_06_0367 - 22747760-22748931,22750324-22750550,22751035-22751075     27   9.1  
11_06_0364 - 22727978-22729149,22730475-22730727,22731628-227319...    27   9.1  
05_02_0092 - 6522057-6523502                                           27   9.1  
04_04_0960 + 29704009-29705679                                         27   9.1  

>12_02_0361 - 17979979-17979982,17980093-17981045
          Length = 318

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 172 ACWNRAASLATRVALVTTVQILSETLSAAVILRASSVAPYNRRFSTDPAPRTSSAQSSGS 351
           A W   +SLA R + +    ++   L AA    A    P N   ++ P+  +SS+ SS +
Sbjct: 171 ATWIAQSSLAPRTSSIAEAIVIFRELLAAAYTPALPDHPVNNHTASSPSTSSSSSSSSSA 230


>02_05_0278 +
           27404914-27404947,27405088-27405228,27405747-27405772,
           27406036-27406071,27406296-27406976
          Length = 305

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = +1

Query: 184 RAASLATRVALVTTVQILSETLSAAVILRASSVAPYNRRFSTDPAPRTSSA 336
           R    A+     +T +      SA    R SS AP  RR S +P PR SSA
Sbjct: 233 RTGGSASDTRTTSTPRSAPRCASARAASRRSSAAPARRRAS-EPRPRVSSA 282


>11_06_0367 - 22747760-22748931,22750324-22750550,22751035-22751075
          Length = 479

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 444 RAWARDQIAPHLCSCPRRCIFSDDNTGTDFC 352
           R+ +   + PH C+C R+ + S D     +C
Sbjct: 429 RSLSSGSMRPHYCTCHRKLMRSKDRVECSYC 459


>11_06_0364 - 22727978-22729149,22730475-22730727,22731628-22731963,
            22732306-22732512,22734988-22735686,22736441-22736590,
            22740204-22740962,22741023-22741235
          Length = 1262

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 444  RAWARDQIAPHLCSCPRRCIFSDDNTGTDFC 352
            R+ +   + PH C+C R+ + S D     +C
Sbjct: 1212 RSLSSGSMRPHYCTCHRKLMRSKDRVECSYC 1242


>05_02_0092 - 6522057-6523502
          Length = 481

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 241 ETLSAAVILRASSVAPYNRRFSTDPAPRTSSAQSSGSTEIGA 366
           ++  AA++   + ++ + RRF+ DPA    SA ++G   + A
Sbjct: 115 QSADAAMVAELTKLSDHKRRFARDPAAAAKSA-AAGPAALAA 155


>04_04_0960 + 29704009-29705679
          Length = 556

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 427 PNRTASLLMPTAMHFFRRQYWHRFLLILRIEH 332
           PN + S+L+P     F R  W   +++  IEH
Sbjct: 251 PNASPSMLLPRFFRVFARWKWPSPVMLRAIEH 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,658,189
Number of Sequences: 37544
Number of extensions: 169449
Number of successful extensions: 484
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)