Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I24
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   288   5e-79
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    60   2e-10
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    57   2e-09
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    30   0.28 

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  288 bits (706), Expect = 5e-79
 Identities = 145/192 (75%), Positives = 155/192 (80%)
 Frame = +3

Query: 6   RIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXX 185
           RI+NVIGEP+DERGPI   K + IHA+AP F + S   EIL TGIKVVDLLAPYA     
Sbjct: 140 RIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAPYARGGKI 199

Query: 186 XXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKT 365
                     TV I ELINN+AKAHGGYSVF GVGERTREGNDLY EM E+GVI L+ + 
Sbjct: 200 GLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGVGERTREGNDLYREMQETGVIKLEGE- 258

Query: 366 SKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALL 545
           SK ALV+GQMNEPPGARARVALTGLTVAEYFRD EGQDVLLFIDNIFRFTQAGSEVSALL
Sbjct: 259 SKAALVFGQMNEPPGARARVALTGLTVAEYFRDIEGQDVLLFIDNIFRFTQAGSEVSALL 318

Query: 546 GRIPSAVGYQPT 581
           GRIPSAVGYQPT
Sbjct: 319 GRIPSAVGYQPT 330


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 3/172 (1%)
 Frame = +3

Query: 66  TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINN 245
           T  + A  P   +++  Q +L TG +V+D L P                 TV+   L   
Sbjct: 216 TWPVRAARPVADNLTANQPLL-TGQRVLDALYPCVQGGTTAIPGAFGCGKTVISQSLSKY 274

Query: 246 VAKAHGGYSVFAGVGERTREGNDLYHEMIESGV-ISLKDKT--SKVALVYGQMNEPPGAR 416
              ++    V+ G GER  E  ++  +  E  + I+ K +    +  LV    N P  AR
Sbjct: 275 ---SNSDLIVYVGCGERGNEMAEVLMDFPELTIDINGKPEPIMKRTTLVANTSNMPVAAR 331

Query: 417 ARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 572
                TG+T+AEY+RDQ G++V +  D+  R+ +A  E+S  L  +P+  GY
Sbjct: 332 EASIYTGITLAEYYRDQ-GKNVSMMADSTSRWAEALREISGRLAEMPADSGY 382


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 7/196 (3%)
 Frame = +3

Query: 6   RIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXX 185
           R+++ +G PID +GPI T +   +  +AP  +  +   E + TG+K +D + P       
Sbjct: 134 RVVDALGNPIDGKGPIKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRE 193

Query: 186 XXXXXXXXXXTVLIMELINNVAKAHGG-------YSVFAGVGERTREGNDLYHEMIESGV 344
                     T + ++ I N  + +         Y V+  VG++      L  ++ E+  
Sbjct: 194 LIIGDRQTGKTAIALDTILNHKRWNNSSDESKKLYCVYVAVGQKRSTVAQLVQKLEEN-- 251

Query: 345 ISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAG 524
               D      +V    +E    +     +G  + E+FRD  G+  L+  D++ +   A 
Sbjct: 252 ----DSLKYSIIVAATASESAPLQYLAPFSGCAMGEWFRD-NGKHGLVVYDDLSKQAVAY 306

Query: 525 SEVSALLGRIPSAVGY 572
            ++S LL R P    Y
Sbjct: 307 RQMSLLLRRPPGREAY 322


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 24/100 (24%), Positives = 38/100 (38%)
 Frame = +3

Query: 273 VFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAE 452
           VFA +G           +  E+G         +V L     N+P   R       L+ +E
Sbjct: 208 VFAAMGVNLETARFFQRDFEENGSFE------RVTLFLNLANDPTIERIITPRLALSASE 261

Query: 453 YFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 572
           +   Q  + VL  + ++  +  A  EVSA    +P   GY
Sbjct: 262 FLAYQTEKHVLTILTDMTSYADALREVSAAREEVPGRRGY 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,929
Number of Sequences: 5004
Number of extensions: 49730
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)