Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I24
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 54 6e-08
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 54 1e-07
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 44 7e-05
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 36 0.024
09_02_0465 - 9594866-9595672,9596036-9597496 29 2.0
07_03_0251 + 15831712-15832127,15832203-15832344,15832692-158330... 29 2.0
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 29 2.7
02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087 28 4.7
12_01_0518 - 4093206-4094955,4095357-4095810,4095966-4096236,409... 28 6.2
12_01_0512 - 4055074-4055337,4055424-4055727,4055774-4055898,405... 28 6.2
08_02_0358 + 16176373-16176534,16176628-16176739,16176967-161771... 28 6.2
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 54.4 bits (125), Expect = 6e-08
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Frame = +3
Query: 126 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 305
L+TG +V+D L P TV I + ++ + + V+ G GER
Sbjct: 246 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV-ISQALSKYSNSEA--VVYVGCGER--- 299
Query: 306 GNDLYHEMIESGVISL-------KDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRD 464
GN++ +++ +++ + + LV N P AR TG+T+AEYFRD
Sbjct: 300 GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD 359
Query: 465 QEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 572
G +V + D+ R+ +A E+S L +P+ GY
Sbjct: 360 M-GYNVSMMADSTSRWAEALREISGRLAEMPADSGY 394
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 53.6 bits (123), Expect = 1e-07
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 4/153 (2%)
Frame = +3
Query: 126 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 305
L+TG +V+D L P TV I + ++ + + V+ G GER E
Sbjct: 232 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV-ISQALSKYSNSQA--VVYVGCGERGNE 288
Query: 306 GNDLYHEMIESGVISLKDKTSKV----ALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 473
++ + + + + + V LV N P AR TG+T+AEY+RD G
Sbjct: 289 MAEVLMDFPQLTMTTEDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYYRDM-G 347
Query: 474 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 572
+V + D+ R+ +A E+S L +P+ GY
Sbjct: 348 YNVSMMADSTSRWAEALREISGRLAEMPADSGY 380
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 44.4 bits (100), Expect = 7e-05
Identities = 48/203 (23%), Positives = 78/203 (38%), Gaps = 14/203 (6%)
Frame = +3
Query: 6 RIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXX 185
RI N G+PID PI + I + + + +E++ TGI +D++ A
Sbjct: 144 RIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 203
Query: 186 XXXXXXXXXXTVLIME------LINNVAK---AHGGYS-----VFAGVGERTREGNDLYH 323
+ + L+ ++ K A GG VFA +G
Sbjct: 204 PLFSAAGLPHNEIAAQICRQAGLVKSLEKGKHAEGGEDDNFAIVFAAMGVNMETAQFFKR 263
Query: 324 EMIESGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 503
+ E+G + +V L N+P R LT AEY + G+ VL+ + ++
Sbjct: 264 DFEENGSME------RVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDM 317
Query: 504 FRFTQAGSEVSALLGRIPSAVGY 572
+ A EVSA +P GY
Sbjct: 318 SSYADALREVSAAREEVPGRRGY 340
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 35.9 bits (79), Expect = 0.024
Identities = 27/100 (27%), Positives = 41/100 (41%)
Frame = +3
Query: 273 VFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAE 452
VFA +G + E+G + +V L N+P R LT AE
Sbjct: 217 VFAAMGVNMETAQFFKRDFEENGSME------RVTLFLNLANDPTIERIITPRIALTTAE 270
Query: 453 YFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 572
Y + G+ VL+ + ++ + A EVSA +P GY
Sbjct: 271 YLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGY 310
>09_02_0465 - 9594866-9595672,9596036-9597496
Length = 755
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Frame = +3
Query: 351 LKDKTSKVALVYGQMNEPPGARARVALTGLTVA-------EYFRDQEGQDVLLFIDNIFR 509
LK + K+A+ YG +N PPG RV + L V +Y EG+ +LL N F
Sbjct: 684 LKYHSEKLAVAYGILNIPPGRPIRV-IKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFH 742
Query: 510 FTQAGS 527
+ GS
Sbjct: 743 HFRGGS 748
>07_03_0251 +
15831712-15832127,15832203-15832344,15832692-15833056,
15833134-15833293,15833699-15834036,15834138-15834315,
15834454-15834987,15835176-15836291
Length = 1082
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +3
Query: 252 KAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVAL 431
+ H G S +A + RT L ++ E + + + V+G++NEP G +A + L
Sbjct: 67 RPHSG-SNYAVLTRRTHNWQGLEQDITEKVTVGTEYIVAAHVRVHGELNEPVGIQATLKL 125
Query: 432 TG 437
G
Sbjct: 126 EG 127
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 432 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQP 578
TGLT A+ D+ + V F+DN R G + + G++ S +G P
Sbjct: 260 TGLTPAQLAADKSHRQVAFFLDNAKRVYDRGCDGNTNFGKL-SKLGLAP 307
>02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087
Length = 790
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 169 PREARSVCSVVPASVRPYLLWS*LITSLKPMEVTL 273
PR +RSV + P SV P + + TS +PM T+
Sbjct: 182 PRRSRSVAPMSPRSVAPAAPMTPMSTSARPMTPTM 216
>12_01_0518 -
4093206-4094955,4095357-4095810,4095966-4096236,
4096308-4096628
Length = 931
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -1
Query: 451 SATVRPVSATRAR----APGGSFICP*TRATLEVLSFREMTPDSIISWYKSLPSRVRSPT 284
SA V PV A R A G + P ++ L E T S+ W LPSR +P+
Sbjct: 247 SAPVSPVVAFTPRQAEVAAGWPLLSPDLKSALP-----EWTEMSVARWAMQLPSRCPAPS 301
Query: 283 PAN 275
P N
Sbjct: 302 PLN 304
>12_01_0512 -
4055074-4055337,4055424-4055727,4055774-4055898,
4055995-4056164,4056264-4056524,4056644-4057153,
4057309-4057588,4057669-4057971
Length = 738
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -1
Query: 451 SATVRPVSATRAR----APGGSFICP*TRATLEVLSFREMTPDSIISWYKSLPSRVRSPT 284
SA V PV A R A G + P ++ L E T S+ W LPSR +P+
Sbjct: 244 SAPVSPVVAFTPRQAEVAAGWPLLSPDLKSALP-----EWTEMSVARWAMQLPSRCPAPS 298
Query: 283 PAN 275
P N
Sbjct: 299 PLN 301
>08_02_0358 +
16176373-16176534,16176628-16176739,16176967-16177151,
16177325-16177330
Length = 154
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = -1
Query: 454 YSATVRPVSATRARAPGGSFICP*TRATLEVLSFREMTPDSIISWYKSLPSRVRSPTPAN 275
Y T V A+ R G +F C T +L M ++ YK+ S++ P PA
Sbjct: 24 YLETSIHVHASVPRRMGLAFTCT---CTSSLLCQGPMQMKMLLDVYKAFISKLVKPPPAG 80
Query: 274 TE*PPWALA 248
T PW A
Sbjct: 81 TWLTPWCSA 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,233,020
Number of Sequences: 37544
Number of extensions: 340089
Number of successful extensions: 952
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -