Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I24
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   328   1e-90
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    60   1e-09
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    60   1e-09
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    59   3e-09
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...    57   1e-08
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    40   0.001
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    36   0.021
Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    28   4.2  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    28   4.2  
Z81481-4|CAB03950.1|  345|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    27   9.7  
AF099916-4|AAC68778.1|  189|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  328 bits (807), Expect = 1e-90
 Identities = 163/192 (84%), Positives = 168/192 (87%)
 Frame = +3

Query: 6   RIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXX 185
           RI+NVIGEPIDERGPI +   AAIHAEAPEFV+MSV+QEILVTGIKVVDLLAPYA     
Sbjct: 152 RIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKI 211

Query: 186 XXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKT 365
                     TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE GVI LK K 
Sbjct: 212 GLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIEGGVIDLKGKN 271

Query: 366 SKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALL 545
           SKV+LVYGQMNEPPGARARV LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALL
Sbjct: 272 SKVSLVYGQMNEPPGARARVCLTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALL 331

Query: 546 GRIPSAVGYQPT 581
           GRIPSAVGYQPT
Sbjct: 332 GRIPSAVGYQPT 343


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 7/196 (3%)
 Frame = +3

Query: 6   RIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXX 185
           R+++ +G PID +GPI   + + +  +AP  +     +E +VTG+K VD L P       
Sbjct: 107 RVVDALGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRE 166

Query: 186 XXXXXXXXXXTVLIMELINNVAKAHGG-------YSVFAGVGERTREGNDLYHEMIESGV 344
                     T + ++ I N  + +         + ++  VG++      +   + ++G 
Sbjct: 167 LIIGDRQTGKTAIAIDTIINQKRFNDAGDDKKKLFCIYVAVGQKRSTVAQIVKRLTDAGA 226

Query: 345 ISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAG 524
           +   D T    +V    ++    +     +G  + E+FRD  G+  L+  D++ +   A 
Sbjct: 227 M---DYT---IVVSATASDAAPLQFLAPYSGCAMGEHFRD-NGKHALIIFDDLSKQAVAY 279

Query: 525 SEVSALLGRIPSAVGY 572
            ++S LL R P    Y
Sbjct: 280 RQMSLLLRRPPGREAY 295


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 7/196 (3%)
 Frame = +3

Query: 6   RIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXX 185
           R+++ +G PID +GPI   + + +  +AP  +     +E +VTG+K VD L P       
Sbjct: 134 RVVDALGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRE 193

Query: 186 XXXXXXXXXXTVLIMELINNVAKAHGG-------YSVFAGVGERTREGNDLYHEMIESGV 344
                     T + ++ I N  + +         + ++  VG++      +   + ++G 
Sbjct: 194 LIIGDRQTGKTAIAIDTIINQKRFNDAGDDKKKLFCIYVAVGQKRSTVAQIVKRLTDAGA 253

Query: 345 ISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAG 524
           +   D T    +V    ++    +     +G  + E+FRD  G+  L+  D++ +   A 
Sbjct: 254 M---DYT---IVVSATASDAAPLQFLAPYSGCAMGEHFRD-NGKHALIIFDDLSKQAVAY 306

Query: 525 SEVSALLGRIPSAVGY 572
            ++S LL R P    Y
Sbjct: 307 RQMSLLLRRPPGREAY 322


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
 Frame = +3

Query: 126 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 305
           L+ G +V+D L P                 TV+   L      ++    ++ G GER  E
Sbjct: 216 LLCGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKY---SNSDAIIYVGCGERGNE 272

Query: 306 GNDLYHEMIESGVISLKDKTS---KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQ 476
            +++  +  E  +      TS   + ALV    N P  AR     TG+T+AEYFRD  G 
Sbjct: 273 MSEVLRDFPELTMEVEGVTTSIMKRTALVANTSNMPVAAREASIYTGITLAEYFRDM-GL 331

Query: 477 DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 572
           +V +  D+  R+ +A  E+S  LG +P+  GY
Sbjct: 332 NVAMMADSTSRWAEALREISGRLGEMPADSGY 363


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 7/192 (3%)
 Frame = +3

Query: 18  VIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXX 197
           V+G PID +GPI   + + +  +AP  +     +E +VTG+K VD L P           
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIG 162

Query: 198 XXXXXXTVLIMELINNVAKAHGG-------YSVFAGVGERTREGNDLYHEMIESGVISLK 356
                 T + ++ I N  + +         + ++  VG++      +   + ++G +   
Sbjct: 163 DRQTGKTAIAIDTIINQKRFNDAGDDKKKLFCIYVAVGQKRSTVAQIVKRLTDAGAM--- 219

Query: 357 DKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 536
           D T    +V    ++    +     +G  + E+FRD  G+  L+  D++ +   A  ++S
Sbjct: 220 DYT---IVVSATASDAAPLQFLAPYSGCAMGEHFRD-NGKHALIIFDDLSKQAVAYRQMS 275

Query: 537 ALLGRIPSAVGY 572
            LL R P    Y
Sbjct: 276 LLLRRPPGREAY 287


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 9/198 (4%)
 Frame = +3

Query: 6   RIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXX 185
           RI N  G+PID+  P+  +    I+ +     +    +E++ TGI  +D++   A     
Sbjct: 124 RIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGISAIDVMNSIARGQKI 183

Query: 186 XXXXXXXXXXTVLIMELINN--VAKAHGGYS-------VFAGVGERTREGNDLYHEMIES 338
                       +  +++    + +  G  +       VFA +G           +  E 
Sbjct: 184 PIFSAAGLPHNEIAAQIVRQGGLVQLPGRNNETVNFAIVFAAMGVNMETARFFKQDFEEC 243

Query: 339 GVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQ 518
           G +        V L     N+P   R       LT AE+F    G+ VL+ + ++  + +
Sbjct: 244 GSMD------NVCLFLNLANDPTIERIITPRIALTAAEFFAYHCGKHVLVVLTDMSSYAE 297

Query: 519 AGSEVSALLGRIPSAVGY 572
           A  E+SA    +P   G+
Sbjct: 298 ALREISAAREEVPGRRGF 315


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 41/198 (20%), Positives = 74/198 (37%), Gaps = 9/198 (4%)
 Frame = +3

Query: 6   RIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXX 185
           RI N  G+PID+  P+  +    I+ +          +E++ TGI  +D++   A     
Sbjct: 112 RIFNGSGKPIDKGPPVLAEDFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKI 171

Query: 186 XXXXXXXXXXTVLIMELINNVA------KAHGGYS---VFAGVGERTREGNDLYHEMIES 338
                       +  +++          + H   +   VFA +G           +  E+
Sbjct: 172 PIFSASGLPHNEIAAQIVRQGGLVQLPDRPHEQTNFAIVFAAMGVNMETARFFKQDFEEN 231

Query: 339 GVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQ 518
           G +        V L     N+P   R       LT AE+   Q  + VL+ + ++  + +
Sbjct: 232 GSME------NVCLFLNLANDPTIERIITPRIALTSAEFLAYQCKKHVLVVLTDMSSYAE 285

Query: 519 AGSEVSALLGRIPSAVGY 572
           A  EVSA    +P   G+
Sbjct: 286 ALREVSAAREEVPGRRGF 303


>Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical
           protein F28H7.6 protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 431 ECNTGSCTRGFIHLSIDKSYLGSLVFQGD 345
           +C  G C  GF+  ++   Y G   FQGD
Sbjct: 322 KCYQGECRGGFVSEAVKDRYSGCETFQGD 350


>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
           receptor protein 2 protein.
          Length = 1338

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 264 GYSVFAGVGERTREGNDLYHEMIESGVI--SLKDKTSKVAL 380
           GY  FAG G+     ND  H +I S VI  S+++ T  V L
Sbjct: 780 GYYAFAGFGQLLNNNND--HTLINSQVIGASIQNATQSVTL 818


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
           protein LAT-2 protein.
          Length = 1338

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 264 GYSVFAGVGERTREGNDLYHEMIESGVI--SLKDKTSKVAL 380
           GY  FAG G+     ND  H +I S VI  S+++ T  V L
Sbjct: 780 GYYAFAGFGQLLNNNND--HTLINSQVIGASIQNATQSVTL 818


>Z81481-4|CAB03950.1|  345|Caenorhabditis elegans Hypothetical
           protein C38D9.4 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 140 DTGHQDFLLYRHIYEFGSFSV 78
           DTG + F  + +IY+FGSFS+
Sbjct: 7   DTGFKFFFCWVNIYKFGSFSL 27


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 89  SFSVDGSCFISRNRAAFVNRLTDDID 12
           SFS D S  IS ++  F+ RL DDI+
Sbjct: 565 SFSADLSVLISSSKMPFLARLFDDIE 590


>AF099916-4|AAC68778.1|  189|Caenorhabditis elegans Hypothetical
           protein F54C4.1 protein.
          Length = 189

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 285 VGERTREGNDLYHEMIESGVISLKDKT-SKVAL 380
           +GER R   +L  E I+   I+LKD T S++AL
Sbjct: 84  IGERRRPRTELTLEQIDERAIALKDYTRSRLAL 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,474,639
Number of Sequences: 27780
Number of extensions: 282928
Number of successful extensions: 839
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)