Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I22
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    35   0.006
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    29   0.23 
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    26   2.8  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    25   3.7  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    24   8.5  
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    24   8.5  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 34.7 bits (76), Expect = 0.006
 Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 14/145 (9%)
 Frame = +2

Query: 23  NEIFALKPAPIQVMWLGYPGT------SGASYMDYLVTDAVTSPLELVNQYSEKLAY--- 175
           NE  A  P P+  +   Y  T      + AS +DY  T A   P E  N YS +LAY   
Sbjct: 58  NEFQASPPPPLGYVTPEYGATGTPVNANNASRVDYATT-AANVPEEYANDYSSELAYIHN 116

Query: 176 ---MPHTYFVGDHKQMF-PHLQERLILSDKIKSHNSLGGVADNVAVINATDLSPLVENTD 343
              MPH   + +H     P L E    SD I   +        V    + DL  +V   D
Sbjct: 117 VNDMPHVDGLSNHSPATQPDLFETPAQSDPILFSSYPHAAQARVDPSISKDLYNMVPRPD 176

Query: 344 IQEIT-EVVRAARPVQISLKVAELP 415
              ++    R+A  + +  + +E P
Sbjct: 177 ANTVSPHAARSASSLPVPKEASETP 201


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 251 KIKSHNSLGGVADNVAVINATDLSPL-VENTDIQEITEVVRA--ARPVQISLKVAELPTT 421
           K+KSHNSL  +  NV   N+   +PL  E+ D+   T   R   +  V +S     L T 
Sbjct: 233 KLKSHNSLPSIRTNVRYSNSKPSTPLSPEDVDLGTYTVKNRDSWSNEVNLSASTNNLSTN 292

Query: 422 T 424
           T
Sbjct: 293 T 293


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 110 LVTDAV----TSPLELVNQYSEKLAYMPHTYFVGDHKQMFPHLQERLILSDKIKSH 265
           L+T+AV     S L+     + K    P+T F GD KQ+   L++ L  S KI S+
Sbjct: 283 LITEAVFARCLSSLKSERVRASKKLTGPNTKFTGDKKQLIDDLEDALYAS-KIISY 337


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +2

Query: 185 TYFVGDHKQMFPHLQERLI---LSDKIKSHNSL 274
           T+FV  H  MFPHL++RL     SD  K +N++
Sbjct: 234 THFVPKH--MFPHLEDRLAELNTSDISKINNTI 264


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +2

Query: 2   HEAKGARNEIFALKPAPIQVMWLGYPGTSGASYMDYLVTDAVTSPLELVNQYSEKLAYMP 181
           +EAK   N + A K     +   G     G  + D ++ D  +  LE   Q    L  M 
Sbjct: 351 YEAKTVANIVSASKVVFCTLHGAGSRQLKGQRF-DAVIIDEASQALE--PQCWIPLLGMN 407

Query: 182 HTYFVGDHKQMFPHLQER 235
                GDH Q+ P++Q +
Sbjct: 408 KVILAGDHMQLSPNVQSK 425


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 113 VTDAVTSPLELVNQYSEKLAYMPHTYF 193
           +  A + P+E+V  Y E  A +PH  F
Sbjct: 131 ILGAASHPIEVVGPYIEDEAIIPHKGF 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,369
Number of Sequences: 5004
Number of extensions: 36072
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)