Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I22
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742... 104 3e-23
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473... 100 4e-22
08_02_1577 + 27985066-27985434,27985520-27985594,27986159-279863... 57 7e-09
01_06_0561 + 30251547-30252173,30252248-30252405,30253250-302541... 31 0.38
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865... 30 0.88
04_04_1540 - 34245246-34245797,34246904-34247157,34247989-34248577 29 1.2
05_01_0006 - 44159-44206,44805-44850,45730-45818,46377-46394,464... 29 2.0
02_02_0025 + 6183328-6186127,6186265-6186623 29 2.0
05_06_0059 - 25264704-25266032 28 2.7
05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431... 28 3.6
05_01_0025 - 171012-171263,171361-171450,171536-171592,171907-17... 28 3.6
01_01_0085 - 639959-640192,640290-640379,640465-640521,640826-64... 28 3.6
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42... 27 6.2
>01_06_1788 -
39873900-39873986,39874009-39874137,39874180-39874246,
39874874-39874909,39875146-39875292,39875772-39875899,
39876349-39876435,39876523-39876633,39877433-39877600,
39877665-39877749,39877826-39877942,39878051-39878127,
39879981-39880077,39880175-39880377,39880519-39880645,
39880687-39880754,39880855-39880908,39880990-39881108,
39881651-39881729,39881803-39881865,39882113-39882232,
39882718-39882774,39882872-39882988,39883122-39883172,
39883262-39883360,39883438-39883583,39883740-39883887
Length = 928
Score = 104 bits (250), Expect = 3e-23
Identities = 45/67 (67%), Positives = 56/67 (83%)
Frame = +2
Query: 11 KGARNEIFALKPAPIQVMWLGYPGTSGASYMDYLVTDAVTSPLELVNQYSEKLAYMPHTY 190
KGARNEIFAL+PAPIQV ++G+PGT+GA Y+DYLVTD SPL+ + YSEKL ++PH Y
Sbjct: 665 KGARNEIFALQPAPIQVSYMGFPGTTGADYIDYLVTDEFVSPLKFSHIYSEKLVHLPHCY 724
Query: 191 FVGDHKQ 211
FV D+KQ
Sbjct: 725 FVNDYKQ 731
>02_03_0272 -
17146578-17146691,17146806-17146926,17147260-17147365,
17147469-17147551,17147688-17147815,17147897-17147983,
17148064-17148174,17148502-17148669,17148753-17148837,
17148921-17149037,17149127-17149203,17149299-17149370,
17150538-17150634,17150750-17150952,17151115-17151217,
17151324-17151391,17151461-17151514,17151595-17151704,
17151982-17152060,17152171-17152233,17153410-17153529,
17153913-17153969,17154071-17154187,17156426-17156476,
17156591-17156689,17156787-17156935,17158090-17158312
Length = 953
Score = 100 bits (240), Expect = 4e-22
Identities = 44/67 (65%), Positives = 55/67 (82%)
Frame = +2
Query: 11 KGARNEIFALKPAPIQVMWLGYPGTSGASYMDYLVTDAVTSPLELVNQYSEKLAYMPHTY 190
KGARNEIFAL+PAPIQV ++G+PGT+GA+Y+DYLVTD SP + YSEKL ++PH Y
Sbjct: 704 KGARNEIFALQPAPIQVSYMGFPGTTGAAYIDYLVTDEFVSPTCYSHIYSEKLVHLPHCY 763
Query: 191 FVGDHKQ 211
FV D+KQ
Sbjct: 764 FVNDYKQ 770
>08_02_1577 +
27985066-27985434,27985520-27985594,27986159-27986320,
27986415-27986590,27986681-27986756,27987154-27987282,
27987363-27987482,27987734-27987815,27988016-27988110,
27988427-27988491,27988604-27988802,27989426-27989620,
27989866-27989960,27990059-27990194,27990265-27990482,
27990729-27990856,27991148-27991617
Length = 929
Score = 56.8 bits (131), Expect = 7e-09
Identities = 21/52 (40%), Positives = 35/52 (67%)
Frame = +2
Query: 35 ALKPAPIQVMWLGYPGTSGASYMDYLVTDAVTSPLELVNQYSEKLAYMPHTY 190
A +PAPIQV W+GYP T+G +DY +TD++ P + ++ E+L +P ++
Sbjct: 574 ACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPPDTTQKHVEELVRLPESF 625
>01_06_0561 +
30251547-30252173,30252248-30252405,30253250-30254192,
30254271-30254438,30254546-30254857,30255498-30255557,
30255905-30255937,30256083-30256271
Length = 829
Score = 31.1 bits (67), Expect = 0.38
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = -1
Query: 298 SHIISYTSQAVVRFYFITQNETFLQMREHLLMISNEVRMWHIRKFLA 158
SHI S + +V+ + +T+++ F++MREH E R+W + LA
Sbjct: 564 SHIASSDFEGIVQVWDVTRSQVFVEMREH------ERRVWSVDFSLA 604
>04_04_1212 -
31786063-31786195,31786275-31786398,31786486-31786597,
31786691-31786822,31786929-31787111,31787351-31787479,
31787618-31787788,31788142-31788244,31788628-31788737,
31789158-31789265,31789337-31789512,31790082-31790352,
31790524-31790738,31791042-31792574,31792665-31792728,
31793171-31793251
Length = 1214
Score = 29.9 bits (64), Expect = 0.88
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 137 LELVNQYSEKLAYM-PHTYFVGDHKQMFPHLQER-LILSDKIKSHNSLGGVADNVAV 301
L ++Y++ L Y+ PHTY GD ++F + R L+ + +I H +D +++
Sbjct: 485 LNSASRYADNLWYIEPHTYKAGDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSI 541
>04_04_1540 - 34245246-34245797,34246904-34247157,34247989-34248577
Length = 464
Score = 29.5 bits (63), Expect = 1.2
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -1
Query: 220 REHLLMISNEVRMWHIRKFLA 158
R+H+ ++++ V MWH+RK +A
Sbjct: 189 RDHVFVLTDPVAMWHVRKEIA 209
>05_01_0006 -
44159-44206,44805-44850,45730-45818,46377-46394,
46490-46609,46702-46772,47038-47086,47567-47658,
47769-47811,47928-48049,48143-48426,48961-49148,
49220-49336,49516-49557,49991-50101,50530-50688,
50710-50769,50850-50927,51010-51103,51182-51483,
51659-51721,51808-51936
Length = 774
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 125 VTSPLELVNQYSEKLAYMPHTYFVGDHKQMFPHLQERL-ILSDKIK 259
V+S L L+ +Y+ + + + V + K +F HLQE+L I +K+K
Sbjct: 305 VSSLLPLLTEYNLQPSVLDAQSIVSNLKVLFKHLQEKLAITEEKLK 350
>02_02_0025 + 6183328-6186127,6186265-6186623
Length = 1052
Score = 28.7 bits (61), Expect = 2.0
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 128 TSPLELVNQYSEKLAYMPHTYFVGDHKQMFPHLQERLILSDKIKSHNSLGGVADNVA-VI 304
T PLE+ N S ++ YM F G +L L+LS +N G V D++ ++
Sbjct: 430 TIPLEIGNLRSLEVLYMDQNLFTGTIPPSVGNLSNLLVLS--FAQNNLSGHVPDSIGNLV 487
Query: 305 NATDL 319
T+L
Sbjct: 488 KLTEL 492
>05_06_0059 - 25264704-25266032
Length = 442
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 278 GVADNVAVINATDLSPLVENTDIQEITEVVRAARPVQI 391
G A + V+N SPL +N D E+ ++ A PV I
Sbjct: 249 GGAISPLVVNKAQSSPLAKNDDDDELVDISGEASPVAI 286
>05_07_0064 +
27440520-27440942,27442387-27442998,27443109-27443175,
27443271-27443362,27443493-27443708,27443869-27444006,
27444325-27444474
Length = 565
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 310 CVYNSHIISYTSQAVVRFYFITQNETFLQMR 218
C N ++ TS A+ R+YF +N+T + R
Sbjct: 345 CTVNDVLVGVTSAALSRYYFRKENDTNSEKR 375
>05_01_0025 -
171012-171263,171361-171450,171536-171592,171907-171939,
172050-172124,172219-172308,172421-172522,172725-172795,
173326-173479,173587-173663,174183-174219
Length = 345
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 278 GVADNVAVINATDLSPLVENTDIQEITEVVRAARPVQISLKVAELPTTT 424
G D V VI+ DLS E D+Q + VVR+ +SL+ ++P +
Sbjct: 173 GTRDEVTVIHG-DLSAFQE--DLQSVNLVVRSLESKLVSLEYTQVPAAS 218
>01_01_0085 -
639959-640192,640290-640379,640465-640521,640826-640858,
640972-641046,641141-641230,641343-641444,641643-641713,
642243-642396,642497-642573,643077-643113
Length = 339
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 278 GVADNVAVINATDLSPLVENTDIQEITEVVRAARPVQISLKVAELPTTT 424
G D V VI+ DLS E D+Q + VVR+ +SL+ ++P +
Sbjct: 173 GTRDEVTVIHG-DLSAFQE--DLQSVNLVVRSLESKLVSLEYTQVPAAS 218
>01_01_0056 +
422141-422379,422524-422620,422697-422774,422871-422930,
423019-423123,423743-423856,424145-424186,424380-424496,
424568-424755,425502-425785,425869-425990,426118-426160,
426265-426356,427331-427379,427623-427693,427793-427912,
428586-428674,429266-429311,429926-429973
Length = 667
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +2
Query: 116 TDAVTSPLELVNQYSE-KLAYMPHTYFVGDHKQMFPHLQERLILSDK 253
T ++S L L+++Y + + + V + K +F HLQE+LI++++
Sbjct: 200 TTFISSLLPLLSEYENLQPSVLDAQSIVSNLKVLFKHLQEQLIITEE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,687,577
Number of Sequences: 37544
Number of extensions: 227564
Number of successful extensions: 485
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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