Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I22
(424 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc... 149 8e-37
U21320-2|ABC71824.1| 973|Caenorhabditis elegans O-linked glcnac... 149 8e-37
U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac... 149 8e-37
Z46676-4|CAA86669.2| 822|Caenorhabditis elegans Hypothetical pr... 28 2.4
AF173372-1|AAD51972.1| 822|Caenorhabditis elegans transmembrane... 28 2.4
Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical pr... 27 4.2
AL032660-1|CAA21752.1| 711|Caenorhabditis elegans Hypothetical ... 27 7.3
AL023847-8|CAI46616.1| 262|Caenorhabditis elegans Hypothetical ... 27 7.3
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ... 27 7.3
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 26 9.7
U56965-2|AAB52667.3| 581|Caenorhabditis elegans Hypothetical pr... 26 9.7
>U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc
transferase protein.
Length = 1151
Score = 149 bits (361), Expect = 8e-37
Identities = 72/143 (50%), Positives = 100/143 (69%), Gaps = 7/143 (4%)
Frame = +2
Query: 11 KGARNEIFALKPAPIQVMWLGYPGTSGASYMDYLVTDAVTSPLELVNQYSEKLAYMPHTY 190
KGARNEIFAL+PAPIQVMWLGYP TSGA++MDY++TDAVTSPL L N ++EKLAYMPHT+
Sbjct: 751 KGARNEIFALRPAPIQVMWLGYPSTSGATFMDYIITDAVTSPLRLANAFTEKLAYMPHTF 810
Query: 191 FVGDHKQMFPHLQERLILSDKIKSHNSLGGVADNVAVINATDLSPLVENTDIQE---ITE 361
F+GDH QM HL +++++ DK + D+ ++N ++ P++ ++I+E TE
Sbjct: 811 FIGDHAQMLRHLTDKVVVKDKETTER------DSCLIMNTANMDPILAKSEIKEQVLDTE 864
Query: 362 VVRAARP----VQISLKVAELPT 418
VV ++ L V E+PT
Sbjct: 865 VVSGPNKELVRAEMVLPVLEVPT 887
>U21320-2|ABC71824.1| 973|Caenorhabditis elegans O-linked glcnac
transferase protein1, isoform b protein.
Length = 973
Score = 149 bits (361), Expect = 8e-37
Identities = 72/143 (50%), Positives = 100/143 (69%), Gaps = 7/143 (4%)
Frame = +2
Query: 11 KGARNEIFALKPAPIQVMWLGYPGTSGASYMDYLVTDAVTSPLELVNQYSEKLAYMPHTY 190
KGARNEIFAL+PAPIQVMWLGYP TSGA++MDY++TDAVTSPL L N ++EKLAYMPHT+
Sbjct: 573 KGARNEIFALRPAPIQVMWLGYPSTSGATFMDYIITDAVTSPLRLANAFTEKLAYMPHTF 632
Query: 191 FVGDHKQMFPHLQERLILSDKIKSHNSLGGVADNVAVINATDLSPLVENTDIQE---ITE 361
F+GDH QM HL +++++ DK + D+ ++N ++ P++ ++I+E TE
Sbjct: 633 FIGDHAQMLRHLTDKVVVKDKETTER------DSCLIMNTANMDPILAKSEIKEQVLDTE 686
Query: 362 VVRAARP----VQISLKVAELPT 418
VV ++ L V E+PT
Sbjct: 687 VVSGPNKELVRAEMVLPVLEVPT 709
>U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac
transferase protein1, isoform a protein.
Length = 1151
Score = 149 bits (361), Expect = 8e-37
Identities = 72/143 (50%), Positives = 100/143 (69%), Gaps = 7/143 (4%)
Frame = +2
Query: 11 KGARNEIFALKPAPIQVMWLGYPGTSGASYMDYLVTDAVTSPLELVNQYSEKLAYMPHTY 190
KGARNEIFAL+PAPIQVMWLGYP TSGA++MDY++TDAVTSPL L N ++EKLAYMPHT+
Sbjct: 751 KGARNEIFALRPAPIQVMWLGYPSTSGATFMDYIITDAVTSPLRLANAFTEKLAYMPHTF 810
Query: 191 FVGDHKQMFPHLQERLILSDKIKSHNSLGGVADNVAVINATDLSPLVENTDIQE---ITE 361
F+GDH QM HL +++++ DK + D+ ++N ++ P++ ++I+E TE
Sbjct: 811 FIGDHAQMLRHLTDKVVVKDKETTER------DSCLIMNTANMDPILAKSEIKEQVLDTE 864
Query: 362 VVRAARP----VQISLKVAELPT 418
VV ++ L V E+PT
Sbjct: 865 VVSGPNKELVRAEMVLPVLEVPT 887
>Z46676-4|CAA86669.2| 822|Caenorhabditis elegans Hypothetical
protein C08B11.4 protein.
Length = 822
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 195 TKYVCGIYASFSLYWFTNSNGDVT 124
T V G+Y+ F LYWF + GD++
Sbjct: 660 TSTVLGLYSVFGLYWFAKT-GDIS 682
>AF173372-1|AAD51972.1| 822|Caenorhabditis elegans transmembrane
protein NRF-6 protein.
Length = 822
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 195 TKYVCGIYASFSLYWFTNSNGDVT 124
T V G+Y+ F LYWF + GD++
Sbjct: 660 TSTVLGLYSVFGLYWFAKT-GDIS 682
>Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical
protein C08F8.2b protein.
Length = 719
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 176 MPHTYFVGDHKQMFPHLQ---ERLILSDKIKSHN 268
M + +F+ KQ+FPHL+ + I+SD + HN
Sbjct: 144 MLYPFFLDHAKQVFPHLEAMDDLRIISDLTRPHN 177
>Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical
protein C08F8.2a protein.
Length = 721
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 176 MPHTYFVGDHKQMFPHLQ---ERLILSDKIKSHN 268
M + +F+ KQ+FPHL+ + I+SD + HN
Sbjct: 146 MLYPFFLDHAKQVFPHLEAMDDLRIISDLTRPHN 179
>AL032660-1|CAA21752.1| 711|Caenorhabditis elegans Hypothetical
protein Y70G10A.2 protein.
Length = 711
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 310 CVYNSHIISYTSQAVVRFYFITQNETFLQMREHLLMISNEVRMWHIRKFL 161
C+Y++ + +QA RFYFI + ++ L MI + W++ + L
Sbjct: 268 CLYSNPTVFAITQAACRFYFIAIHFCYV-----LAMIQWVMESWNVNQIL 312
>AL023847-8|CAI46616.1| 262|Caenorhabditis elegans Hypothetical
protein Y57A10C.11 protein.
Length = 262
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 361 FCDLLNICIFHXXXXXRCVYNSHIISYTSQ 272
FC L+NI CV+NS+ I ++ Q
Sbjct: 197 FCPLINIFTLPTIHLAICVHNSNSIHFSRQ 226
>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
protein F25G6.9 protein.
Length = 1373
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 167 LAYMPHTYFVGDHKQMFPHLQERLILSD-KIKSHNSLGGVAD 289
+ Y+P+ + +KQ+ L E+ ++D K+ S N + G D
Sbjct: 236 ILYLPYAVMLSQYKQVIVKLVEQSKMADHKLASENRVSGCRD 277
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +1
Query: 295 GCYKRNGSISASGKYRYSRDHRSGESGSACSDI 393
GC + G +R+ + R+G++ S C+D+
Sbjct: 191 GCLDDGNGKARIGIFRFPHEVRTGKTSSVCNDV 223
>U56965-2|AAB52667.3| 581|Caenorhabditis elegans Hypothetical
protein C15H9.5 protein.
Length = 581
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 214 HLLMISNEVRMWHIRKFLAVLV 149
HLL SN ++ + KF+AVLV
Sbjct: 277 HLLCRSNSENIYRVHKFMAVLV 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,961,599
Number of Sequences: 27780
Number of extensions: 203046
Number of successful extensions: 619
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -