Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I21
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb...    30   0.18 
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    26   4.0  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   5.2  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    25   5.2  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   6.9  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   6.9  

>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +2

Query: 20  YIIDLESANGTFVNNKKIEPRRY----VELLERDVVKYG 124
           YI D++S+NGTFVN  ++ P        +L   D+V +G
Sbjct: 68  YIRDVKSSNGTFVNETRLSPENKPSAPCKLNSGDIVDFG 106


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 20  YIIDLESANGTFVNNKKIEP 79
           YI D+ S++GTF+N+ ++ P
Sbjct: 99  YIQDMGSSSGTFLNHVRLSP 118


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/44 (22%), Positives = 26/44 (59%)
 Frame = -3

Query: 514 IIWYKNIYTIILYYPGRKHGITFVWNKGR*ETFLILYLNL*CMF 383
           I W ++   +I+ +P  ++ +TF WN+   +++ ++ L +  +F
Sbjct: 87  IYWDEDYQKVIVDHPPVRYRVTFPWNRNA-KSYCLVDLRMRAIF 129


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 60  IIKRSNRVVTWNYWNGTWSSTASLNAN 140
           I+  S++    NYWNG+W    + N +
Sbjct: 138 IVLVSSKYNPKNYWNGSWRCICNYNVS 164


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 217 RDHNRPDQAREENQTGERCRRRLNHTAHIQR 309
           R+    ++ARE N  G +  +R N + ++QR
Sbjct: 433 REQLNTERARENNLGGSQIEKRANESNNLQR 463


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 270 LPTATKSHGPYTEAEIEINCNNKT 341
           LP++T ++GP      EIN N  T
Sbjct: 274 LPSSTNTYGPSNSYGYEININEST 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,156
Number of Sequences: 5004
Number of extensions: 36180
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)