Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_I21
(525 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0284 + 26918888-26918982,26919345-26919392,26919511-269195... 83 2e-16
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 62 2e-10
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348... 41 7e-04
06_01_1137 + 9412230-9412378,9412549-9412634,9413417-9413496,941... 40 0.001
08_02_0208 - 14318485-14319283,14319704-14320170 36 0.015
11_01_0154 + 1281434-1281725,1281923-1281987,1282112-1282175,128... 29 2.3
03_05_0803 + 27829438-27829461,27829558-27829643,27829960-278300... 28 4.0
03_05_0994 + 29541109-29542527 27 7.0
03_06_0400 + 33673429-33673560,33674611-33674788,33674933-336751... 27 9.2
>05_06_0284 +
26918888-26918982,26919345-26919392,26919511-26919556,
26919660-26919730,26920430-26920469
Length = 99
Score = 82.6 bits (195), Expect = 2e-16
Identities = 35/52 (67%), Positives = 42/52 (80%)
Frame = +2
Query: 11 VRPYIIDLESANGTFVNNKKIEPRRYVELLERDVVKYGFSQREYVLLHENSK 166
VRPY++DL S NGTF+N +IEP RY EL E+D +K+G S REYVLLHENSK
Sbjct: 47 VRPYLMDLGSTNGTFINENRIEPSRYYELFEKDTIKFGNSSREYVLLHENSK 98
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 62.5 bits (145), Expect = 2e-10
Identities = 25/43 (58%), Positives = 33/43 (76%)
Frame = +2
Query: 11 VRPYIIDLESANGTFVNNKKIEPRRYVELLERDVVKYGFSQRE 139
VRPY++DL S NGTF+N +IEP RY EL E+D +K+G S R+
Sbjct: 643 VRPYLMDLGSTNGTFINENRIEPSRYYELFEKDTIKFGNSSRD 685
>11_01_0450 -
3487464-3487844,3487883-3488268,3488883-3489033,
3489132-3491102,3492090-3492149,3492240-3492436,
3492678-3492963
Length = 1143
Score = 40.7 bits (91), Expect = 7e-04
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +2
Query: 23 IIDLESANGTFVNNKKIEPRRYVELLERDVVKYGFSQREYVL 148
+ DL S +GT+++ ++I P VEL DV++ G S+REY L
Sbjct: 90 VTDLSSVHGTWISGRRIPPNTPVELTAGDVLRLGSSRREYRL 131
>06_01_1137 +
9412230-9412378,9412549-9412634,9413417-9413496,
9413826-9413881,9414038-9414086,9414692-9414841,
9414993-9415088,9415442-9415555,9415655-9415785,
9416171-9416408,9416603-9416656,9417100-9417117,
9417906-9418722,9418797-9418846
Length = 695
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/42 (35%), Positives = 29/42 (69%)
Frame = +2
Query: 20 YIIDLESANGTFVNNKKIEPRRYVELLERDVVKYGFSQREYV 145
++ DL S +G+F+N +++ + YVE+ DV+++G S R Y+
Sbjct: 89 FLYDLGSTHGSFINKTQVKKKIYVEIHVGDVIRFGQSSRLYI 130
>08_02_0208 - 14318485-14319283,14319704-14320170
Length = 421
Score = 36.3 bits (80), Expect = 0.015
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +2
Query: 2 HEGVRPYIIDLESANGTFVNNKKIEPRRYVELLERDVVKYGFSQREYVL 148
H Y+IDL S +GTFV N+++ VEL +++ S R Y+L
Sbjct: 152 HRNGSIYVIDLGSVHGTFVANERLTKDNPVELEVGQSLRFAASTRTYIL 200
>11_01_0154 +
1281434-1281725,1281923-1281987,1282112-1282175,
1282303-1282449,1282583-1282677,1284358-1284465
Length = 256
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 23 IIDLESANGTFVNNKKIEP 79
+ DLES NGT++N +++ P
Sbjct: 157 VTDLESTNGTYINERRLTP 175
>03_05_0803 +
27829438-27829461,27829558-27829643,27829960-27830088,
27830806-27830925,27831007-27831132,27831349-27831433,
27831538-27831648,27832215-27832308,27832448-27832728,
27832840-27832947,27833163-27833284,27833825-27834035,
27834149-27834376,27834591-27834680
Length = 604
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 421 TFLILYLNL*CMFYFNIFFAVNIKQVPVLLLQLISISASVYGPC 290
TFL Y L F ++ ++N+ PVL +L ++++ +Y C
Sbjct: 221 TFLEFYETLLGFINFKLYHSINVNYPPVLDPRLEALASELYALC 264
>03_05_0994 + 29541109-29542527
Length = 472
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 23 IIDLESANGTFVNNKKIEPRRYVELLERDVVKYGFSQREYVLLHENS 163
+ D+ S+NGT +N + P L + DV+K G S V + +S
Sbjct: 68 VSDVGSSNGTLLNGSPLVPTVPSPLSDGDVIKIGESSMLVVSIAPDS 114
>03_06_0400 +
33673429-33673560,33674611-33674788,33674933-33675100,
33675207-33675382,33675508-33675666,33676093-33676230,
33676294-33676355,33676509-33676644,33677174-33677268,
33677520-33677635,33677716-33677845,33677938-33677992,
33678065-33678205
Length = 561
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Frame = +2
Query: 23 IIDLESANGTFVNNKKIE-----PRRY---VELLERDVVKYGFSQR 136
I+D+ S NGTF+N++ + RR+ EL + D++ G S +
Sbjct: 224 IVDMGSLNGTFLNSRSVNHPDVGSRRWGEPAELADGDIITLGSSSK 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,260,844
Number of Sequences: 37544
Number of extensions: 201910
Number of successful extensions: 392
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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