Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I21
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-4|AAB42323.1|  299|Caenorhabditis elegans Hypothetical pr...    77   8e-15
Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical pr...    33   0.13 
AF067608-3|AAC17655.2|  302|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical ...    29   2.7  

>U88308-4|AAB42323.1|  299|Caenorhabditis elegans Hypothetical
           protein C32E8.5 protein.
          Length = 299

 Score = 77.0 bits (181), Expect = 8e-15
 Identities = 32/49 (65%), Positives = 42/49 (85%)
 Frame = +2

Query: 11  VRPYIIDLESANGTFVNNKKIEPRRYVELLERDVVKYGFSQREYVLLHE 157
           + PYIIDL S NGTF+N KKIEP+RY+EL E+D++K+GFS REYV++ E
Sbjct: 231 IMPYIIDLGSGNGTFLNEKKIEPQRYIELQEKDMLKFGFSTREYVVMKE 279


>Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical
           protein C01G6.5 protein.
          Length = 952

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 5   EGVRPYIIDLESANGTFVNNKKIEPRRYVELLERDVVKYG 124
           +GV  Y+++  S NGT++N++++   +   L   D +K+G
Sbjct: 78  DGVEEYLVEDISENGTYINDRRLSKDKREILKSGDTIKFG 117


>AF067608-3|AAC17655.2|  302|Caenorhabditis elegans Hypothetical
           protein B0511.7 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 23  IIDLESANGTFVNNKKIEPRRYVELLERDVVKYGFSQREY 142
           +ID++S++GTF+ N ++ P   V +        G S R+Y
Sbjct: 81  LIDMDSSHGTFLGNVRLRPLEVVFMDPGTQFHLGASTRKY 120


>AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical
           protein M4.1 protein.
          Length = 554

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = +2

Query: 20  YIIDLESANGTFVNNKKIE 76
           ++ D +S+NGTFVNN+K++
Sbjct: 69  WLKDTKSSNGTFVNNEKLQ 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,871,665
Number of Sequences: 27780
Number of extensions: 195805
Number of successful extensions: 442
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)