Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I20
         (178 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   0.45 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   2.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   4.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   7.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       19   7.3  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 0.45
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -2

Query: 171 VLSVSSTSMGVSILSSPFTFSGLFSSDTSPACALDVD----VISPSCSFF 34
           ++S    S+G+   + P       S +  P CALD+     V+S S SF+
Sbjct: 155 LISFVPISLGLHRANEPVVLDD--SKEEHPTCALDLTPTYAVVSSSISFY 202


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 98 RLIRRRLARWT 66
          R IRR L RWT
Sbjct: 14 RHIRRELLRWT 24


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 133 FIIAVYFLWFI 101
           FI++   LWFI
Sbjct: 398 FIVSTILLWFI 408


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +2

Query: 62   STSSAQAGDVSDENKPEKVNGDDKIETPMEV 154
            +T +   G ++   +   VNG    E PM++
Sbjct: 1550 ATLTVTGGTIAPARELPDVNGGGNDEDPMKI 1580



 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 164  QFRRLPWGSLF 132
            + R+LP GSLF
Sbjct: 1322 RLRQLPEGSLF 1332


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 158 RRLPWGSLFYHRR 120
           R +  G L+YH+R
Sbjct: 8   RGIEHGGLYYHQR 20


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 56  ITSTSSAQAGDVSDENKPEKVNGDDKI 136
           ++S  S   G    + KP  V+ +DK+
Sbjct: 248 VSSRRSDMNGTTPLDEKPLDVSSNDKV 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,361
Number of Sequences: 438
Number of extensions: 416
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 38
effective length of database: 129,699
effective search space used:  2593980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)