Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I19
         (500 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0HKC1 Cluster: Major facilitator superfamily MFS_1; n=...    33   4.8  
UniRef50_Q09084 Cluster: Extensin (Class II) precursor; n=3; Sol...    32   6.3  

>UniRef50_A0HKC1 Cluster: Major facilitator superfamily MFS_1; n=2;
           Comamonas testosteroni KF-1|Rep: Major facilitator
           superfamily MFS_1 - Comamonas testosteroni KF-1
          Length = 452

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 287 WCCSGWSVCRGGCGPLLVLLLSFW 358
           WCC+GWS+  G CG    + + FW
Sbjct: 101 WCCAGWSMATGLCG----MAMGFW 120


>UniRef50_Q09084 Cluster: Extensin (Class II) precursor; n=3;
           Solanum lycopersicum|Rep: Extensin (Class II) precursor
           - Solanum lycopersicum (Tomato) (Lycopersicon
           esculentum)
          Length = 322

 Score = 32.3 bits (70), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 357 QKDNSNTSRGPQPPRHTDQPLQHHSHPMPS 268
           +K  +   R P PP H   P+ HHS P PS
Sbjct: 64  KKSPTYQHRSPPPPTHKISPVTHHSPPPPS 93


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 385,022,953
Number of Sequences: 1657284
Number of extensions: 5946477
Number of successful extensions: 15721
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15711
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)