Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I19
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    25   4.8  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    25   6.4  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   6.4  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   8.4  

>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = -1

Query: 410 PKKFHFILLQLTILFSNTRKIIATLAEARSRRGTPTSH---YSTIVTLC 273
           P KF  +   LT LFS+T   +    +    R    SH    S + TLC
Sbjct: 362 PDKFFQLQRSLTELFSDTMDFLRDAWDNNKNRDNLASHVTVISAVATLC 410


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 123 NVTNLTYLKKEGFN*RIRIVNNPGDNVV 206
           N TN+TYL+   +N    +    GDNV+
Sbjct: 191 NFTNITYLRDNVWNLEHSVFAPHGDNVI 218


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 123 NVTNLTYLKKEGFN*RIRIVNNPGDNVV 206
           N TN+TYL+   +N    +    GDNV+
Sbjct: 191 NFTNITYLRDNVWNLEHSVFAPHGDNVI 218


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 357 QKDNSNTSRGPQPPRHTDQPLQHHSHP 277
           QK    +   PQ    T QP  H +HP
Sbjct: 276 QKKTPQSGSTPQMQNTTSQPTTHDTHP 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,270
Number of Sequences: 5004
Number of extensions: 26915
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)