Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I19
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081...    28   3.7  
07_01_0817 + 6533316-6533849,6533996-6534064,6534528-6534767,653...    28   4.8  
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285...    28   4.8  
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396...    28   4.8  
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    27   8.5  

>11_08_0092 -
           28307180-28307380,28307471-28307936,28308008-28308117,
           28308206-28308493,28309024-28309059
          Length = 366

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 351 DNSNTSRGPQPPRHTDQPLQHHSH 280
           D ++ +R PQP     QP QHH H
Sbjct: 94  DGTHEARVPQPGSQNVQPGQHHGH 117


>07_01_0817 +
           6533316-6533849,6533996-6534064,6534528-6534767,
           6537747-6537965,6538041-6538133,6538231-6538332,
           6538415-6538858
          Length = 566

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 98  IERERDSQRHTLYKSYYIVTSLECSIHYHP 9
           +ER+ + +RH LYK+Y   T+ +C  H  P
Sbjct: 310 VERQYNVRRHKLYKTY--CTTKQCPSHVAP 337


>02_04_0160 -
           20427774-20428217,20428301-20428402,20428503-20428595,
           20428675-20428860,20428966-20429213,20429292-20429412,
           20430674-20430718,20431086-20431138,20431152-20431173
          Length = 437

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 98  IERERDSQRHTLYKSYYIVTSLECSIHYHP 9
           +ER+ + +RH LYK+Y   T+ +C  H  P
Sbjct: 181 VERQYNVRRHKLYKTY--CTTKQCPSHVAP 208


>01_06_1507 - 37838645-37839311,37839393-37839499,37839588-37839663,
            37839747-37839869,37840051-37840208,37840311-37840385,
            37840466-37840506,37840594-37840670,37840755-37840883,
            37840990-37841060,37841237-37841332,37841489-37841584,
            37841681-37841953,37842871-37842957,37843101-37843178,
            37843350-37843514,37843622-37843768,37843921-37843983,
            37844082-37844201,37844352-37844543,37844672-37844748,
            37845094-37845196,37845684-37845887
          Length = 1074

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 354  KDNSNTSRGPQPPRHTDQPLQHHSHPMPS 268
            +DN + SRG  PP H      + SH  PS
Sbjct: 960  RDNHHDSRGRVPPYHQSGGNSYQSHSAPS 988


>05_05_0155 +
           22787658-22787930,22788029-22788096,22789600-22789915,
           22790207-22790323
          Length = 257

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 327 PQPPRHTDQPLQHHSHPMP 271
           P PP H   P  HH HP P
Sbjct: 66  PHPPHHPHPP-HHHPHPHP 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,921,552
Number of Sequences: 37544
Number of extensions: 152251
Number of successful extensions: 374
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)