Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_I19
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-2|CAA86055.1|  585|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   4.4  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   4.4  
Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z37983-2|CAA86055.1|  585|Caenorhabditis elegans Hypothetical
           protein B0393.2 protein.
          Length = 585

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 354 KDNSNTSRGPQPPRHTDQPLQ 292
           +D SNT  GP  PR +++PL+
Sbjct: 442 RDRSNTVSGPSSPRRSNEPLR 462


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 357  QKDNSNTSRGPQPPRHTDQPLQHHSH 280
            +KD+ ++ RGP P +  D+P++H S+
Sbjct: 3012 EKDD-DSQRGPSPVKSEDEPVKHESY 3036


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 357  QKDNSNTSRGPQPPRHTDQPLQHHSH 280
            +KD+ ++ RGP P +  D+P++H S+
Sbjct: 3012 EKDD-DSQRGPSPVKSEDEPVKHESY 3036


>Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 326 RSRRGTPTSHYSTIVTL 276
           +S+R TPT HYSTI +L
Sbjct: 56  KSQRTTPTRHYSTISSL 72


>Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 326 RSRRGTPTSHYSTIVTL 276
           +S+R TPT HYSTI +L
Sbjct: 56  KSQRTTPTRHYSTISSL 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,091,385
Number of Sequences: 27780
Number of extensions: 150700
Number of successful extensions: 460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)